RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 LIMS3P0CW19 117 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 LIMS4P0CW20 117 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 TMEM11P17152 192 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 GZMHP20718 246 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 DCKP27707 260 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 SLC6A1P30531 599 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 SSTR5P35346 364 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 ZNF93P35789 620 aaPredicted RBP5.72□□□□□ -1.49
USP54-208ENST00000461520 GTF2A1P52655 376 aaPredicted RBP5.72□□□□□ -1.49
USP54-208ENST00000461520 PPP3R1P63098 170 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 PIGYQ3MUY2 71 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 UTF1Q5T230 341 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 C10orf99Q6UWK7 81 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 TMPRSS11AQ6ZMR5 421 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 LINC00596Q86U02 117 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 CCDC28AQ8IWP9 274 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 DRAM1Q8N682 238 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 C5orf56Q8N8D9 126 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 ZNF555Q8NEP9 628 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 OR56B4Q8NH76 319 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 PLPPR1Q8TBJ4 325 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 MRGPRDQ8TDS7 321 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 CHPT1Q8WUD6 406 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 APH1BQ8WW43 257 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 RGP1Q92546 391 aaPredicted RBP5.72□□□□□ -1.49
USP54-208ENST00000461520 RDH12Q96NR8 316 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 S100A13Q99584 98 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 FAM192AQ9GZU8 254 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 METTL9Q9H1A3 318 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 S100A14Q9HCY8 104 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 FGF20Q9NP95 211 aaPredicted RBP5.72□□□□□ -1.49
USP54-208ENST00000461520 TMEM138Q9NPI0 162 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 ZFP57Q9NU63 452 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 PAK1IP1Q9NWT1 392 aaPredicted RBP5.72□□□□□ -1.49
USP54-208ENST00000461520 TAS2R4Q9NYW5 299 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 ST3GAL6Q9Y274 331 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 DNAH9Q9NYC9 4486 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 TMEM30CPA0ZSE6 113 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 IRGMA1A4Y4 181 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 OR7C1O76099 320 aaPredicted RBP5.71□□□□□ -1.5
USP54-208ENST00000461520 CDRT1O95170 752 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 IGKV1D-33P01593 117 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 IGKV1-33P01594 117 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 IGHV3-7P01780 117 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 IGHG2P01859 326 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 BDKRB2P30411 391 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 RBM11P57052 281 aaKnown RBP5.71□□□□□ -1.5
USP54-208ENST00000461520 SLC35B1P78383 322 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 ZNF816Q0VGE8 651 aaPredicted RBP5.71□□□□□ -1.5
USP54-208ENST00000461520 DIAPH2-AS1Q14236 149 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 GPR176Q14439 515 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 HES1Q14469 280 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 LTC4SQ16873 150 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 MPV17LQ2QL34 196 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 Q3ZCU0 254 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 VAX1Q5SQQ9 334 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 DDI2Q5TDH0 399 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 XAF1Q6GPH4 301 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 LINC00311Q8N616 119 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 RNF152Q8N8N0 203 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 SUMF2Q8NBJ7 301 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 OR51D1Q8NGF3 324 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 OR52M1Q8NGK5 317 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 OR10K1Q8NGX5 313 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 OR10X1Q8NGY0 326 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 OR52N1Q8NH53 320 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 RFESDQ8TAC1 157 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 LEAP2Q969E1 77 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 SMIM19Q96E16 107 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 GPR61Q9BZJ8 451 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 BABAM2Q9NXR7 383 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 SMPD3Q9NY59 655 aaPredicted RBP5.71□□□□□ -1.5
USP54-208ENST00000461520 ING4Q9UNL4 249 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 TENM3Q9P273 2699 aa5.71□□□□□ -1.5
USP54-208ENST00000461520 IGHV1-3A0A0C4DH29 117 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 SERPINE3A8MV23 424 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 K7EIL1 84 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 CCRL2O00421 344 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 HSD17B6O14756 317 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 GEMIN2O14893 280 aaKnown RBP5.7□□□□□ -1.5
USP54-208ENST00000461520 OGG1O15527 345 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 ORC5O43913 435 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 WBP4O75554 376 aaKnown RBP5.7□□□□□ -1.5
USP54-208ENST00000461520 GPX5O75715 221 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 GAPDHP04406 335 aaKnown RBP5.7□□□□□ -1.5
USP54-208ENST00000461520 GTF2F2P13984 249 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 MYL12AP19105 171 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 SERPINA2P20848 420 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 IL3RAP26951 378 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 GNG10P50151 68 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 ETV1P50549 477 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 RPL23AP62750 156 aaKnown RBP5.7□□□□□ -1.5
USP54-208ENST00000461520 EGFEM1PQ0D2K5 195 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 MED21Q13503 144 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 RIPK1Q13546 671 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 EBI3Q14213 229 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 Q499Y3 187 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 YIF1BQ5BJH7 314 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 OR2G6Q5TZ20 316 aa5.7□□□□□ -1.5
USP54-208ENST00000461520 ACSM6Q6P461 480 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms