RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 CACNG5Q9UF02 275 aa12.67□□□□□ -0.38
LDLR-202ENST00000455727 SLC25A15Q9Y619 301 aa12.67□□□□□ -0.38
LDLR-202ENST00000455727 A6NLC8 198 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 SYNGR2O43760 224 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 PPT1P50897 306 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 TAS2R30P59541 319 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 PAX5Q02548 391 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 RTP5Q14D33 572 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 SMIM21Q3B7S5 101 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 TMEM217Q8N7C4 229 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 OR10Z1Q8NGY1 313 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 COA4Q9NYJ1 87 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 NXPH3O95157 252 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 OR3A1P47881 315 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 DPPA3Q6W0C5 159 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 OR1L1Q8NH94 360 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 UBALD1Q8TB05 177 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 COQ2Q96H96 371 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 LURAP1Q96LR2 239 aa12.66□□□□□ -0.38
LDLR-202ENST00000455727 PRR14LQ5THK1 2151 aa12.65□□□□□ -0.38
LDLR-202ENST00000455727 FAM90A26D6RGX4 464 aa12.65□□□□□ -0.38
LDLR-202ENST00000455727 IL2RGP31785 369 aa12.65□□□□□ -0.38
LDLR-202ENST00000455727 AESQ08117 197 aa12.65□□□□□ -0.38
LDLR-202ENST00000455727 EIF2S3LQ2VIR3 472 aaKnown RBP12.65□□□□□ -0.38
LDLR-202ENST00000455727 PRAMEF6Q5VXH4 476 aa12.65□□□□□ -0.38
LDLR-202ENST00000455727 SP5Q6BEB4 398 aaPredicted RBP12.65□□□□□ -0.38
LDLR-202ENST00000455727 MSL2Q9HCI7 577 aa12.65□□□□□ -0.38
LDLR-202ENST00000455727 PRELID3BQ9Y3B1 194 aa12.65□□□□□ -0.38
LDLR-202ENST00000455727 HBZP02008 142 aa12.65□□□□□ -0.39
LDLR-202ENST00000455727 NFYBP25208 207 aa12.65□□□□□ -0.39
LDLR-202ENST00000455727 PAX6P26367 422 aa12.65□□□□□ -0.39
LDLR-202ENST00000455727 EIF4EBP1Q13541 118 aaPredicted RBP12.65□□□□□ -0.39
LDLR-202ENST00000455727 Q6ZS92 163 aa12.65□□□□□ -0.39
LDLR-202ENST00000455727 SLC35B3Q9H1N7 401 aa12.65□□□□□ -0.39
LDLR-202ENST00000455727 SEBOXQ9HB31 216 aaPredicted RBP12.65□□□□□ -0.39
LDLR-202ENST00000455727 MMP24Q9Y5R2 645 aa12.65□□□□□ -0.39
LDLR-202ENST00000455727 CNOT1A5YKK6 2376 aaKnown RBP12.64□□□□□ -0.39
LDLR-202ENST00000455727 PTBP3O95758 552 aaKnown RBP12.64□□□□□ -0.39
LDLR-202ENST00000455727 ZNF16P17020 682 aaPredicted RBP12.64□□□□□ -0.39
LDLR-202ENST00000455727 PPP1CCP36873 323 aaKnown RBP12.64□□□□□ -0.39
LDLR-202ENST00000455727 IZUMO4Q1ZYL8 232 aa12.64□□□□□ -0.39
LDLR-202ENST00000455727 C3orf36Q3SXR2 165 aa12.64□□□□□ -0.39
LDLR-202ENST00000455727 FGFRL1Q8N441 504 aa12.64□□□□□ -0.39
LDLR-202ENST00000455727 TCTEX1D1Q8N7M0 179 aa12.64□□□□□ -0.39
LDLR-202ENST00000455727 FZR1Q9UM11 496 aa12.64□□□□□ -0.39
LDLR-202ENST00000455727 IFNA5P01569 189 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 TIMM23BQ5SRD1 257 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 TRAT1Q6PIZ9 186 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 SPSB3Q6PJ21 355 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 SMCO4Q9NRQ5 59 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 UFSP2Q9NUQ7 469 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 RFNGQ9Y644 331 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 CHD3Q12873 2000 aaKnown RBP12.63□□□□□ -0.39
LDLR-202ENST00000455727 CFHR2P36980 270 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 GABRA2P47869 451 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 COL10A1Q03692 680 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 KRBOX4Q5JUW0 171 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 FAM90A1Q86YD7 464 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 OR52L2PQ8NGH6 319 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 NINJ1Q92982 152 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 ABHD14AQ9BUJ0 271 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 PSENENQ9NZ42 101 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 KIAA1456Q9P272 454 aa12.63□□□□□ -0.39
LDLR-202ENST00000455727 CACNA1DQ01668 2161 aa12.62□□□□□ -0.39
LDLR-202ENST00000455727 TLE4Q04727 773 aa12.62□□□□□ -0.39
LDLR-202ENST00000455727 AKR1C8PQ5T2L2 129 aa12.62□□□□□ -0.39
LDLR-202ENST00000455727 OR2D2Q9H210 308 aa12.62□□□□□ -0.39
LDLR-202ENST00000455727 KCNJ16Q9NPI9 418 aa12.62□□□□□ -0.39
LDLR-202ENST00000455727 ZFHX4Q86UP3 3567 aa12.62□□□□□ -0.39
LDLR-202ENST00000455727 OR8U8P0C7N1 319 aa12.62□□□□□ -0.39
LDLR-202ENST00000455727 TCF15Q12870 199 aa12.62□□□□□ -0.39
LDLR-202ENST00000455727 CATR1Q13166 79 aa12.62□□□□□ -0.39
LDLR-202ENST00000455727 LRRC29Q8WV35 223 aa12.62□□□□□ -0.39
LDLR-202ENST00000455727 FBXO7Q9Y3I1 522 aa12.62□□□□□ -0.39
LDLR-202ENST00000455727 MED19A0JLT2 244 aaPredicted RBP12.61□□□□□ -0.39
LDLR-202ENST00000455727 RBFOX3A6NFN3 312 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 H3BP45 60 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 TM4SF5O14894 197 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 P0C879 139 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 HBG1P69891 147 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 HBG2P69892 147 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 HTD2P86397 168 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 RUNX1Q01196 453 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 TMEM267Q0VDI3 215 aaPredicted RBP12.61□□□□□ -0.39
LDLR-202ENST00000455727 LINC00518Q8N0U6 118 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 MRGPRDQ8TDS7 321 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 PARD6GQ9BYG4 376 aaPredicted RBP12.61□□□□□ -0.39
LDLR-202ENST00000455727 SAV1Q9H4B6 383 aaPredicted RBP12.61□□□□□ -0.39
LDLR-202ENST00000455727 TUBA4BQ9H853 241 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 MLXQ9UH92 298 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 METRNQ9UJH8 293 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 RNF150Q9ULK6 438 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 FAM215AQ9Y5M1 114 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 TRAV1-1A0A0B4J248 108 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 SRRM5B3KS81 715 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 GPR37O15354 613 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 IGHV3-13P01766 116 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 HBE1P02100 147 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 PRDX2P32119 198 aa12.61□□□□□ -0.39
LDLR-202ENST00000455727 TIMP3P35625 211 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms