RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 COMMD1Q8N668 190 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 OR52L2PQ8NGH6 319 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 PHF21AQ96BD5 680 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 GALMQ96C23 342 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 S1PR3Q99500 378 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 ZNF580Q9UK33 172 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 BLOC1S6Q9UL45 172 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 HSF4Q9ULV5 492 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 RAB26Q9ULW5 256 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 ERICH4A6NGS2 130 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 AP4M1O00189 453 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 PF4P02776 101 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 CD33P20138 364 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 CALRP27797 417 aaKnown RBP9.49□□□□□ -0.89
USP40-210ENST00000454354 BLVRBP30043 206 aaPredicted RBP9.49□□□□□ -0.89
USP40-210ENST00000454354 SLC6A1P30531 599 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 SLC35B1P78383 322 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 P2RY14Q15391 338 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 RAB11BQ15907 218 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 SSX1Q16384 188 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 KHDC1LQ5JSQ8 128 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 FAM71F2Q6NXP2 309 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 ZNF833PQ6ZTB9 187 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 ZNF329Q86UD4 541 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 CNBD2Q96M20 576 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 URM1Q9BTM9 101 aaKnown RBP9.49□□□□□ -0.89
USP40-210ENST00000454354 RIMS4Q9H426 269 aaPredicted RBP9.49□□□□□ -0.89
USP40-210ENST00000454354 PLGRKTQ9HBL7 147 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 ACOT13Q9NPJ3 140 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 ZFP57Q9NU63 452 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 PLEKHJ1Q9NW61 149 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 ABRACLQ9P1F3 81 aa9.49□□□□□ -0.89
USP40-210ENST00000454354 AK6Q9Y3D8 172 aaKnown RBP9.49□□□□□ -0.89
USP40-210ENST00000454354 COL7A1Q02388 2944 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 SAA2-SAA4A0A096LPE2 208 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 LINC01548A6NM66 108 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 SOCS1O15524 211 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 SAA2P0DJI9 122 aaPredicted RBP9.48□□□□□ -0.89
USP40-210ENST00000454354 RANBP1P43487 201 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 F2RL1P55085 397 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 GABARAPL2P60520 117 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 CD200R1LQ6Q8B3 271 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 ETV3LQ6ZN32 361 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 OR2AK2Q8NG84 335 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 RCC1LQ96I51 464 aaKnown RBP9.48□□□□□ -0.89
USP40-210ENST00000454354 RASL11BQ9BPW5 248 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 NABP2Q9BQ15 211 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 GON7Q9BXV9 100 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 MRPL20Q9BYC9 149 aaKnown RBP9.48□□□□□ -0.89
USP40-210ENST00000454354 IFI27L2Q9H2X8 130 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 CHMP1AQ9HD42 196 aaPredicted RBP9.48□□□□□ -0.89
USP40-210ENST00000454354 NECAP2Q9NVZ3 263 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 NDUFB11Q9NX14 153 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 AK3Q9UIJ7 227 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 LINC00527Q9UJ94 153 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 MGAT4AQ9UM21 535 aa9.48□□□□□ -0.89
USP40-210ENST00000454354 TRAV1-2A0A0B4J238 106 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 ITGB1BP1O14713 200 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 LDLRAD4O15165 306 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 MRPS14O60783 128 aaKnown RBP9.47□□□□□ -0.89
USP40-210ENST00000454354 DUS4LO95620 317 aaKnown RBP9.47□□□□□ -0.89
USP40-210ENST00000454354 ATP6V1G2O95670 118 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 IGF1P05019 195 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 IGLL1P15814 213 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 OR3A3P47888 321 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 PSMD7P51665 324 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 TMEM50BP56557 158 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 HLA-DRB3P79483 266 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 CFHR3Q02985 330 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 TEX38Q6PEX7 206 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 LINC00482Q8N8I6 264 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 RNF152Q8N8N0 203 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 OR51D1Q8NGF3 324 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 FAM3DQ96BQ1 224 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 HSPB9Q9BQS6 159 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 ZNF251Q9BRH9 671 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 STEAP1Q9UHE8 339 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 V9GY05 133 aa9.47□□□□□ -0.89
USP40-210ENST00000454354 RRP9O43818 475 aaKnown RBP9.46□□□□□ -0.9
USP40-210ENST00000454354 PRB2P02812 416 aaPredicted RBP9.46□□□□□ -0.9
USP40-210ENST00000454354 GALP22466 123 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 SOX6P35712 828 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 THBS3P49746 956 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 VEGFCP49767 419 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 CLDN12P56749 244 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 MMDQ15546 238 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 PNLIPRP3Q17RR3 467 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 C2orf76Q3KRA6 126 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 FOXB2Q5VYV0 432 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 C18orf65Q6ZTR6 163 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 OR56B1Q8NGI3 324 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 IL1F10Q8WWZ1 152 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 RBMXL1Q96E39 390 aaKnown RBP9.46□□□□□ -0.9
USP40-210ENST00000454354 ARHGAP5-AS1Q96IT6 56 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 AGMATQ9BSE5 352 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 HDHD3Q9BSH5 251 aaPredicted RBP9.46□□□□□ -0.9
USP40-210ENST00000454354 PECRQ9BY49 303 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 Q9N2K0 584 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 C12orf4Q9NQ89 552 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 PIPOXQ9P0Z9 390 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms