RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 IGF1P05019 195 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 PSMA1P25786 263 aaKnown RBP6.13□□□□□ -1.43
CD44-211ENST00000442151 REG1BP48304 166 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 ACSM3Q53FZ2 586 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 MOB1BQ7L9L4 216 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 PRR18Q8N4B5 295 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 TCTEX1D1Q8N7M0 179 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 RNF152Q8N8N0 203 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 BPIFB6Q8NFQ5 453 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 OR4K15Q8NH41 348 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 TFAP2CQ92754 450 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 Q96M66 194 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 OR14A2Q96R54 314 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 P2RX4Q99571 388 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 ABHD14AQ9BUJ0 271 aa6.13□□□□□ -1.43
CD44-211ENST00000442151 CHMP1AQ9HD42 196 aaPredicted RBP6.13□□□□□ -1.43
CD44-211ENST00000442151 MBNL3Q9NUK0 354 aaKnown RBP6.13□□□□□ -1.43
CD44-211ENST00000442151 ZNF107Q9UII5 783 aaPredicted RBP6.13□□□□□ -1.43
CD44-211ENST00000442151 IGHV3-43A0A0B4J1X8 118 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 IGHV3-72A0A0B4J1Y9 119 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 UBE2QL1A1L167 161 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 ITGB1BP1O14713 200 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 RAB29O14966 203 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 ARL6IP5O75915 188 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 IGHG4P01861 327 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 OR8U8P0C7N1 319 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 IGHV3-43DP0DP04 118 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 RAB25P57735 213 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 LRRC36Q1X8D7 754 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 CT45A1Q5HYN5 189 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 ZNF660Q6AZW8 331 aaPredicted RBP6.12□□□□□ -1.43
CD44-211ENST00000442151 HIST2H2BDQ6DRA6 164 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 XAF1Q6GPH4 301 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 LIN54Q6MZP7 749 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 LCNL1Q6ZST4 164 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 C8orf86Q6ZUL3 223 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 OR2AK2Q8NG84 335 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 CT45A3Q8NHU0 189 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 PGLYRP3Q96LB9 341 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 UBE2E2Q96LR5 201 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 NOL4LQ96MY1 436 aaPredicted RBP6.12□□□□□ -1.43
CD44-211ENST00000442151 B9D2Q9BPU9 175 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 VCX3BQ9H321 246 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 BANF2Q9H503 90 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 VSIG4Q9Y279 399 aa6.12□□□□□ -1.43
CD44-211ENST00000442151 TRAV8-7A0A075B6U6 113 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 A0A1W2PPK0 400 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 K7EIL1 84 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 SRMP19623 302 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 RPS11P62280 158 aaKnown RBP eCLIP6.11□□□□□ -1.43
CD44-211ENST00000442151 MRPS15P82914 257 aaKnown RBP6.11□□□□□ -1.43
CD44-211ENST00000442151 GABPB1Q06547 395 aaPredicted RBP6.11□□□□□ -1.43
CD44-211ENST00000442151 LSAMPQ13449 338 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 DIAPH2-AS1Q14236 149 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 RCN1Q15293 331 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 SPHARQ15513 63 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 MMDQ15546 238 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 HSD17B12Q53GQ0 312 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 RBM48Q5RL73 367 aaKnown RBP6.11□□□□□ -1.43
CD44-211ENST00000442151 C1orf100Q5SVJ3 147 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 PYHIN1Q6K0P9 492 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 AHSA2Q719I0 299 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 ZFP41Q8N8Y5 198 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 ZNF485Q8NCK3 441 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 ZNF439Q8NDP4 499 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 TMEM104Q8NE00 496 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 OR10V1Q8NGI7 309 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 OR1L1Q8NH94 360 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 C4orf3Q8WVX3 66 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 UFD1Q92890 307 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 TMEM59Q9BXS4 323 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 ISYNA1Q9NPH2 558 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 PLSCR3Q9NRY6 295 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 PLEKHJ1Q9NW61 149 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 A0A1W2PP11 408 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 NBR2O15453 112 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 LALBAP00709 142 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 HLA-DRB1P01911 266 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 CDK1P06493 297 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 GSTP1P09211 210 aaKnown RBP6.11□□□□□ -1.43
CD44-211ENST00000442151 ZBTB25P24278 435 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 HTR2CP28335 458 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 ACTBP60709 375 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 CBX3Q13185 183 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 PLGLAQ15195 96 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 FAM27D1Q5T7N8 215 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 OGFRL1Q5TC84 451 aaPredicted RBP6.11□□□□□ -1.43
CD44-211ENST00000442151 CEACAM19Q7Z692 300 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 OR6M1Q8NGM8 313 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 OR13C5Q8NGS8 318 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 KCTD7Q96MP8 289 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 TM2D1Q9BX74 207 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 OR51J1Q9H342 316 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 LINC00527Q9UJ94 153 aa6.11□□□□□ -1.43
CD44-211ENST00000442151 PNMA8CA0A1B0GUJ8 204 aa6.1□□□□□ -1.43
CD44-211ENST00000442151 OR5H14A6NHG9 310 aa6.1□□□□□ -1.43
CD44-211ENST00000442151 KRTAP9-7A8MTY7 169 aa6.1□□□□□ -1.43
CD44-211ENST00000442151 SEC14L6B5MCN3 397 aa6.1□□□□□ -1.43
CD44-211ENST00000442151 CASQ2O14958 399 aaPredicted RBP6.1□□□□□ -1.43
CD44-211ENST00000442151 HSPA12AO43301 675 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms