RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 IDH3GP51553 393 aaPredicted RBP9.98□□□□□ -0.81
CD44-209ENST00000433892 ERVK11-1P61568 191 aa9.98□□□□□ -0.81
CD44-209ENST00000433892 PPP1CBP62140 327 aa9.98□□□□□ -0.81
CD44-209ENST00000433892 HAPLN4Q86UW8 402 aa9.98□□□□□ -0.81
CD44-209ENST00000433892 TVP23CQ96ET8 276 aa9.98□□□□□ -0.81
CD44-209ENST00000433892 HIPK2Q9H2X6 1198 aa9.98□□□□□ -0.81
CD44-209ENST00000433892 SEBOXQ9HB31 216 aaPredicted RBP9.98□□□□□ -0.81
CD44-209ENST00000433892 TREM2Q9NZC2 230 aa9.98□□□□□ -0.81
CD44-209ENST00000433892 GTF3C1Q12789 2109 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 TRGV5A0A0B4J1U4 118 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 PIGBOS1A0A0B4J2F0 54 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 CD46P15529 392 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 FGF8P55075 233 aaPredicted RBP9.97□□□□□ -0.81
CD44-209ENST00000433892 HOXA4Q00056 320 aaPredicted RBP9.97□□□□□ -0.81
CD44-209ENST00000433892 KHDC3LQ587J8 217 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 SPANXN5Q5MJ07 72 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 NCMAPQ5T1S8 102 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 FAM180AQ6UWF9 173 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 DHRS13Q6UX07 377 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 MOB1BQ7L9L4 216 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 DRAM1Q8N682 238 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 ZNF525Q8N782 197 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 Q8WTZ3 238 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 ZNF665Q9H7R5 613 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 NIT2Q9NQR4 276 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 LIN7CQ9NUP9 197 aaKnown RBP9.97□□□□□ -0.81
CD44-209ENST00000433892 POLDIP2Q9Y2S7 368 aa9.97□□□□□ -0.81
CD44-209ENST00000433892 LOC102723971A0A1B0GUV8 181 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 CLN5O75503 358 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 TNFSF15O95150 251 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 CXCL1P09341 107 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 WNT2P09544 360 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 PGA5P0DJD9 388 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 HOXB1P14653 301 aaPredicted RBP9.96□□□□□ -0.81
CD44-209ENST00000433892 ERVFRD-1P60508 538 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 RAB11AP62491 216 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 ELOBQ15370 118 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 ZNF726P1Q15940 193 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 SSX7Q7RTT5 188 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 TMPRSS7Q7RTY8 843 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 C1QL4Q86Z23 238 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 Q8IYB0 196 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 LILRB2Q8N423 598 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 TMEM9BQ9NQ34 198 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 RNF150Q9ULK6 438 aa9.96□□□□□ -0.81
CD44-209ENST00000433892 A0A087WWC5 75 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 TRAV1-1A0A0B4J248 108 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 SH2D1BO14796 132 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 LYZL6O75951 148 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 KIAA0141Q14154 515 aaPredicted RBP9.96□□□□□ -0.82
CD44-209ENST00000433892 HNF4GQ14541 408 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 ZNF146Q15072 292 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 ZNF787Q6DD87 383 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 FAM53AQ6NSI3 398 aaPredicted RBP9.96□□□□□ -0.82
CD44-209ENST00000433892 GCNT2Q8N0V5 402 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 FGFRL1Q8N441 504 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 SLC25A40Q8TBP6 338 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 FER1L6-AS2Q96M78 137 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 CDH20Q9HBT6 801 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 MBNL3Q9NUK0 354 aaKnown RBP9.96□□□□□ -0.82
CD44-209ENST00000433892 CACNA1DQ01668 2161 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 LAMA5O15230 3695 aa9.96□□□□□ -0.82
CD44-209ENST00000433892 TGIF2-C20orf24A0A0A6YYL0 155 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 PSPNO60542 156 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 HBG1P69891 147 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 HBG2P69892 147 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 ARG2P78540 354 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 MRPL49Q13405 166 aaKnown RBP9.95□□□□□ -0.82
CD44-209ENST00000433892 OR2B11Q5JQS5 317 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 SLC35E3Q7Z769 313 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 CXorf67Q86X51 503 aaPredicted RBP9.95□□□□□ -0.82
CD44-209ENST00000433892 DEFB123Q8N688 67 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 TCTEX1D2Q8WW35 142 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 ZNF251Q9BRH9 671 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 CDX4O14627 284 aaPredicted RBP9.95□□□□□ -0.82
CD44-209ENST00000433892 RAMP3O60896 148 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 YIF1AO95070 293 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 FABP1P07148 127 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 BCL2P10415 239 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 IGHV1-2P23083 117 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 PLA2G5P39877 138 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 EIF2S3P41091 472 aaKnown RBP9.95□□□□□ -0.82
CD44-209ENST00000433892 CD200P41217 278 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 UBE2NP61088 152 aaKnown RBP9.95□□□□□ -0.82
CD44-209ENST00000433892 PMP22Q01453 160 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 PSG7Q13046 419 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 ZNF674Q2M3X9 581 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 LRRC75BQ2VPJ9 315 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 ZNF766Q5HY98 468 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 FAM90A2PQ658T7 463 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 OR1L1Q8NH94 360 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 RCC1LQ96I51 464 aaKnown RBP9.95□□□□□ -0.82
CD44-209ENST00000433892 OR4C12Q96R67 309 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 TCEAL7Q9BRU2 100 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 GSN-AS1Q9NRJ2 163 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 TINAGQ9UJW2 476 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 WIPI2Q9Y4P8 454 aa9.95□□□□□ -0.82
CD44-209ENST00000433892 WNT9BO14905 357 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 HAND1O96004 215 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 GLIPR1P48060 266 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms