RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 RTBDNQ9BSG5 229 aaPredicted RBP2.28□□□□□ -2.04
USP40-204ENST00000427947 MARVELD1Q9BSK0 173 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 MROQ9BYG7 248 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 SLC22A4Q9H015 551 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 TAS2R5Q9NYW4 299 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 ENOPH1Q9UHY7 261 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 POMPQ9Y244 141 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 DIP2AQ14689 1571 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 FAM135AQ9P2D6 1515 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 GRIN2BQ13224 1484 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 IGHV3-49A0A0A0MS15 119 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.27□□□□□ -2.05
USP40-204ENST00000427947 PLIN3O60664 434 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 MAS1P04201 325 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 SEC11BP0C7V7 166 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 C8orf88P0DMB2 117 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 C1GALT1C1LP0DN25 315 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 ZNF14P17017 642 aaPredicted RBP2.27□□□□□ -2.05
USP40-204ENST00000427947 PSMA1P25786 263 aaKnown RBP2.27□□□□□ -2.05
USP40-204ENST00000427947 IMPA1P29218 277 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 RPL12P30050 165 aaKnown RBP2.27□□□□□ -2.05
USP40-204ENST00000427947 HSPA13P48723 471 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 AESQ08117 197 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 TMEM241Q24JQ0 296 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 CLVS2Q5SYC1 327 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 CD200R1LQ6Q8B3 271 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 SPNS3Q6ZMD2 512 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 FAM19A5Q7Z5A7 132 aaPredicted RBP2.27□□□□□ -2.05
USP40-204ENST00000427947 SLC51BQ86UW2 128 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 MUC15Q8N387 334 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 OR5M1Q8NGP8 315 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 OR11L1Q8NGX0 322 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 DTD1Q8TEA8 209 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 SLC37A2Q8TED4 501 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 DGCR14Q96DF8 476 aaKnown RBP2.27□□□□□ -2.05
USP40-204ENST00000427947 PACRGQ96M98 296 aaPredicted RBP2.27□□□□□ -2.05
USP40-204ENST00000427947 YPEL4Q96NS1 127 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 RNF157Q96PX1 679 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 KRTAP4-3Q9BYR4 195 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 CHST5Q9GZS9 411 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 C8orf17Q9NRJ1 99 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 CA10Q9NS85 328 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 GLS2Q9UI32 602 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 C14orf166Q9Y224 244 aaKnown RBP2.27□□□□□ -2.05
USP40-204ENST00000427947 COL4A6Q14031 1691 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 WNK1Q9H4A3 2382 aa2.27□□□□□ -2.05
USP40-204ENST00000427947 ATMQ13315 3056 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 C9orf84Q5VXU9 1444 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 ABCC11Q96J66 1382 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 MAP3K5Q99683 1374 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 DSTQ03001 7570 aaKnown RBP2.26□□□□□ -2.05
USP40-204ENST00000427947 A0A1W2PQL4 384 aaPredicted RBP2.26□□□□□ -2.05
USP40-204ENST00000427947 TMEM72A0PK05 275 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 CD300LBA8K4G0 201 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 C9JQL5 133 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 C8orf87E5RJ46 101 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 LGALS9O00182 355 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 UPK1AO00322 258 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 BPY2O14599 106 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 FFAR1O14842 300 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 ACOX3O15254 700 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 GYG2O15488 501 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 SULT1B1O43704 296 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 DCTN3O75935 186 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 CXorf1O96002 111 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 CA2P00918 260 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 IGLV3-25P01717 112 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 HLA-DQA1P01909 254 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 CD5P06127 495 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 SNRPAP09012 282 aaKnown RBP2.26□□□□□ -2.05
USP40-204ENST00000427947 LINC00614P0C842 121 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 CECR9P0C854 216 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 AGTR1P30556 359 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 OPRK1P41145 380 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 TAS2R43P59537 309 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 RAB2AP61019 212 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 GTF2BQ00403 316 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 FAM53BQ14153 422 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 CENPWQ5EE01 88 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 RNASE13Q5GAN3 156 aaKnown RBP2.26□□□□□ -2.05
USP40-204ENST00000427947 TEX30Q5JUR7 227 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 CLLU1OSQ5K130 101 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 FAM162BQ5T6X4 162 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 LYPD1Q8N2G4 141 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 SLC25A29Q8N8R3 303 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 ZDHHC22Q8N966 263 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 OR5H2Q8NGV7 314 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 MFSD8Q8NHS3 518 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 ASB13Q8WXK3 278 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 TBL1YQ9BQ87 522 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 OR51B6Q9H340 312 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 SLC2A9Q9NRM0 540 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 MAGI1Q96QZ7 1491 aaPredicted RBP2.26□□□□□ -2.05
USP40-204ENST00000427947 DMBT1Q9UGM3 2413 aaPredicted RBP2.26□□□□□ -2.05
USP40-204ENST00000427947 DMDP11532 3685 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 DOCK8Q8NF50 2099 aa2.26□□□□□ -2.05
USP40-204ENST00000427947 NUP160Q12769 1436 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 IGKV1D-17A0A075B6S4 117 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 TGIF2-C20orf24A0A0A6YYL0 155 aa2.25□□□□□ -2.05
USP40-204ENST00000427947 IGHV2-26A0A0B4J1V2 119 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms