RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 C6orf201Q7Z4U5 140 aa9□□□□□ -0.97
USP4-204ENST00000416417 ZNF491Q8N8L2 437 aa9□□□□□ -0.97
USP4-204ENST00000416417 BPIFB6Q8NFQ5 453 aa9□□□□□ -0.97
USP4-204ENST00000416417 OR1N2Q8NGR9 330 aa9□□□□□ -0.97
USP4-204ENST00000416417 IL1F10Q8WWZ1 152 aa9□□□□□ -0.97
USP4-204ENST00000416417 MRPS24Q96EL2 167 aaKnown RBP9□□□□□ -0.97
USP4-204ENST00000416417 ZNF251Q9BRH9 671 aa9□□□□□ -0.97
USP4-204ENST00000416417 NICN1Q9BSH3 213 aa9□□□□□ -0.97
USP4-204ENST00000416417 OR51J1Q9H342 316 aa9□□□□□ -0.97
USP4-204ENST00000416417 A3GALT2U3KPV4 340 aa9□□□□□ -0.97
USP4-204ENST00000416417 SAA2-SAA4A0A096LPE2 208 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 TRAV41A0A0B4J266 112 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 EFCAB10A6NFE3 127 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 I3L521 148 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 MYL12BO14950 172 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 SAA2P0DJI9 122 aaPredicted RBP8.99□□□□□ -0.97
USP4-204ENST00000416417 CHATP28329 748 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 ECSCRQ19T08 205 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 RPL39P5Q59GN2 51 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 C6orf141Q5SZD1 244 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 TRAT1Q6PIZ9 186 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 FAM131AQ6UXB0 335 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 SETD9Q8NE22 299 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 SETD6Q8TBK2 473 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 MYOZ3Q8TDC0 251 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 DCUN1D4Q92564 292 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 RAB9BQ9NP90 201 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 PSORS1C1Q9UIG5 152 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 JPT1Q9UK76 154 aa8.99□□□□□ -0.97
USP4-204ENST00000416417 FAM90A10PA6NDY2 464 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 FAM90A7PA6NKC0 464 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 FAM90A23PA8MXZ1 464 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 FCN1O00602 326 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 NBR2O15453 112 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 IGLV1-40P01703 118 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 HTR2CP28335 458 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 SLURP1P55000 103 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 WNT4P56705 351 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 TAS2R43P59537 309 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 C5orf64Q2M2E5 130 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 TMEM30BQ3MIR4 351 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 ACSM3Q53FZ2 586 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 ZNF833PQ6ZTB9 187 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 LRRTM1Q86UE6 522 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 NEDD4LQ96PU5 975 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 CLCC1Q96S66 551 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 HDHD3Q9BSH5 251 aaPredicted RBP8.98□□□□□ -0.97
USP4-204ENST00000416417 TMED9Q9BVK6 235 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 IFI27L2Q9H2X8 130 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 FBXL15Q9H469 300 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 ZMAT5Q9UDW3 170 aaKnown RBP8.98□□□□□ -0.97
USP4-204ENST00000416417 GAB2Q9UQC2 676 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 VSIG4Q9Y279 399 aa8.98□□□□□ -0.97
USP4-204ENST00000416417 ZNF256Q9Y2P7 627 aaPredicted RBP8.98□□□□□ -0.97
USP4-204ENST00000416417 A0A0A6YYD4 124 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 EBAG9O00559 213 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 SOX15O60248 233 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 YPEL1O60688 119 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 CA11O75493 328 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 HLA-DRB1P01911 266 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 NHLRC4P0CG21 123 aaPredicted RBP8.97□□□□□ -0.97
USP4-204ENST00000416417 RAB9AP51151 201 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 GABPB1Q06547 395 aaPredicted RBP8.97□□□□□ -0.97
USP4-204ENST00000416417 ZNF616Q08AN1 781 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 UNC119Q13432 240 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 DCTN2Q13561 401 aaKnown RBP8.97□□□□□ -0.97
USP4-204ENST00000416417 RCN1Q15293 331 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 HMGN3Q15651 99 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 RBM48Q5RL73 367 aaKnown RBP8.97□□□□□ -0.97
USP4-204ENST00000416417 STEAP3Q658P3 488 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 LIN54Q6MZP7 749 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 OVCH2Q7RTZ1 564 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 CDH26Q8IXH8 852 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 C8orf59Q8N0T1 100 aaPredicted RBP8.97□□□□□ -0.97
USP4-204ENST00000416417 NANOGP1Q8N7R0 232 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 OR2AK2Q8NG84 335 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 DLX4Q92988 240 aaPredicted RBP8.97□□□□□ -0.97
USP4-204ENST00000416417 GALMQ96C23 342 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 ABHD14BQ96IU4 210 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 UBE2E2Q96LR5 201 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 YPEL2Q96QA6 119 aa8.97□□□□□ -0.97
USP4-204ENST00000416417 FAM103A1Q9BTL3 118 aaKnown RBP8.97□□□□□ -0.97
USP4-204ENST00000416417 CHMP1AQ9HD42 196 aaPredicted RBP8.97□□□□□ -0.97
USP4-204ENST00000416417 CNOT2Q9NZN8 540 aaKnown RBP8.97□□□□□ -0.97
USP4-204ENST00000416417 A0A1W2PN81 502 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 IGHV3-11P01762 117 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 GLAP06280 429 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 OR8U8P0C7N1 319 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 CT45A6P0DMU7 189 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 CT45A5P0DMU8 189 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 CT45A7P0DMV0 189 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 OR5H8P0DN80 308 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 CHRNA7P36544 502 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 LINC00205P59089 165 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 RPS27AP62979 156 aaKnown RBP8.96□□□□□ -0.97
USP4-204ENST00000416417 HTD2P86397 168 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 HAPLN4Q86UW8 402 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 NKAIN3Q8N8D7 197 aa8.96□□□□□ -0.97
USP4-204ENST00000416417 DRAXINQ8NBI3 349 aaPredicted RBP8.96□□□□□ -0.97
USP4-204ENST00000416417 ABHD5Q8WTS1 349 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms