RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 VMO1Q7Z5L0 202 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 IZUMO1Q8IYV9 350 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 MFSD4AQ8N468 514 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 OR11H6Q8NGC7 330 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 OR4A4PQ8NGN8 299 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 FAM216AQ8WUB2 273 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 CCDC107Q8WV48 283 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 SMIM4Q8WVI0 70 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 MS4A7Q9GZW8 240 aaPredicted RBP7.47□□□□□ -1.21
VPS53-203ENST00000401468 TAF9BQ9HBM6 251 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 RAB9BQ9NP90 201 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 AKIP1Q9NQ31 210 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 IDI2-AS1Q9NZ38 188 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 MTFP1Q9UDX5 166 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 ZNF107Q9UII5 783 aaPredicted RBP7.47□□□□□ -1.21
VPS53-203ENST00000401468 NUP50Q9UKX7 468 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 SESN1Q9Y6P5 492 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 U3KQE9 123 aa7.47□□□□□ -1.21
VPS53-203ENST00000401468 TET2Q6N021 2002 aaPredicted RBP7.47□□□□□ -1.21
VPS53-203ENST00000401468 IGKV1D-8A0A087WSZ0 117 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 TRBV6-7A0A0A0MS04 114 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 TRAV39A0A0B4J263 110 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 IGKV1-6A0A0C4DH72 117 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 TMEM89A2RUT3 159 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 FABP12A6NFH5 140 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 ODF3BA8MYP8 253 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 RNASEK-C17orf49H0YIS7 233 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 GABARAPH6UMI1 98 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 ITGB1BP1O14713 200 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 SPINT2O43291 252 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 IGLV1-47P01700 117 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 UBE2E1P51965 193 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 BPIFB3P59826 476 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 DEFB112Q30KQ8 113 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 STEAP3Q658P3 488 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 NCR3LG1Q68D85 454 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 OR52W1Q6IF63 320 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 C9orf139Q6ZV77 190 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 TRAPPC6BQ86SZ2 158 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 LINC00311Q8N616 119 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 TEX29Q8N6K0 151 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 DTX3Q8N9I9 347 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 ZNF439Q8NDP4 499 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 OR1L1Q8NH94 360 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 SNAPC3Q92966 411 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 ARL11Q969Q4 196 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 TMEM133Q9H2Q1 129 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 GFOD1Q9NXC2 390 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 KCNIP1Q9NZI2 227 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 ONECUT1Q9UBC0 465 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 ZNF230Q9UIE0 474 aaPredicted RBP7.46□□□□□ -1.22
VPS53-203ENST00000401468 JPT1Q9UK76 154 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 CMYA5Q8N3K9 4069 aa7.46□□□□□ -1.22
VPS53-203ENST00000401468 IGHV2-26A0A0B4J1V2 119 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 CENPVL3A0A0U1RRI6 287 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 MEX3AA1L020 520 aaKnown RBP7.45□□□□□ -1.22
VPS53-203ENST00000401468 FABP7O15540 132 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 HOXA3O43365 443 aaPredicted RBP7.45□□□□□ -1.22
VPS53-203ENST00000401468 YPEL1O60688 119 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 SCTP09683 121 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 MDKP21741 143 aaPredicted RBP7.45□□□□□ -1.22
VPS53-203ENST00000401468 MRPS15P82914 257 aaKnown RBP7.45□□□□□ -1.22
VPS53-203ENST00000401468 ZNF45Q02386 682 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 SLC9A3R2Q15599 337 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 SPANXN2Q5MJ10 180 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 UTF1Q5T230 341 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 PRAMEF5Q5TYX0 476 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 ZNF626Q68DY1 528 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 RBMS3Q6XE24 437 aaKnown RBP7.45□□□□□ -1.22
VPS53-203ENST00000401468 LYSMD2Q8IV50 215 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 GVQW1Q8N7I0 195 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 BEND2Q8NDZ0 799 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 BEST4Q8NFU0 473 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 OR52I2Q8NH67 350 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 TRIM63Q969Q1 353 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 GALMQ96C23 342 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 AJUBAQ96IF1 538 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 YPEL2Q96QA6 119 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 SDHCQ99643 169 aaPredicted RBP7.45□□□□□ -1.22
VPS53-203ENST00000401468 SRRQ9GZT4 340 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 ZNF286AQ9HBT8 521 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 CHMP1AQ9HD42 196 aaPredicted RBP7.45□□□□□ -1.22
VPS53-203ENST00000401468 ING3Q9NXR8 418 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 ANXA10Q9UJ72 324 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 MGAM2Q2M2H8 2515 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 TRRAPQ9Y4A5 3859 aa7.45□□□□□ -1.22
VPS53-203ENST00000401468 A0A0A6YYJ9 748 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 TUSC2O75896 110 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 CD74P04233 296 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 RNASE1P07998 156 aaKnown RBP7.44□□□□□ -1.22
VPS53-203ENST00000401468 CTXN2P0C2S0 81 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 GSTT2P0CG29 244 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 GSTT2BP0CG30 244 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 TBPP20226 339 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 PAX6P26367 422 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 RCVRNP35243 200 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 ZNF137PP52743 207 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 ACTBP60709 375 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 DGCR2P98153 550 aa7.44□□□□□ -1.22
VPS53-203ENST00000401468 KLRD1Q13241 179 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms