RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 GSG1Q2KHT4 349 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 ACOT6Q3I5F7 207 aaPredicted RBP3.08□□□□□ -1.92
HMGB1-204ENST00000399489 OPN5Q6U736 354 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 IGFL2Q6UWQ7 119 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 TMPPEQ6ZT21 453 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF567Q8N184 647 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 DCUN1D1Q96GG9 259 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 DIRAS2Q96HU8 199 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 GPER1Q99527 375 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 MARVELD1Q9BSK0 173 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 MAP1LC3BQ9GZQ8 125 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 POMKQ9H5K3 350 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 AIG1Q9NVV5 245 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 SPANXCQ9NY87 97 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 TRMT112Q9UI30 125 aaKnown RBP3.08□□□□□ -1.92
HMGB1-204ENST00000399489 PSG8Q9UQ74 426 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 CARHSP1Q9Y2V2 147 aaKnown RBP3.08□□□□□ -1.92
HMGB1-204ENST00000399489 VPS8Q8N3P4 1428 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 MTCL1Q9Y4B5 1905 aaKnown RBP3.08□□□□□ -1.92
HMGB1-204ENST00000399489 CAMTA1Q9Y6Y1 1673 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 TNS1Q9HBL0 1735 aaKnown RBP3.08□□□□□ -1.92
HMGB1-204ENST00000399489 HFM1A2PYH4 1435 aa3.08□□□□□ -1.92
HMGB1-204ENST00000399489 IGHV1-69DA0A0B4J2H0 117 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 OR5H14A6NHG9 310 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 FAAHO00519 579 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 MYL12BO14950 172 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 HMGB3O15347 200 aaKnown RBP3.07□□□□□ -1.92
HMGB1-204ENST00000399489 TNFSF15O95150 251 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CYBAP13498 195 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 SPI1P17947 270 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CXCL3P19876 107 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 AGTR1P30556 359 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CDKN2BP42772 138 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 OR1E2P47887 323 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 PIGPP57054 158 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 GNB1P62873 340 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 SLC35A2P78381 396 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 TGIF1Q15583 401 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 KCNJ8Q15842 424 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 DNLZQ5SXM8 178 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 TBPL2Q6SJ96 375 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 NEGR1Q7Z3B1 354 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 C6orf120Q7Z4R8 191 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 NAA40Q86UY6 237 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CALHM3Q86XJ0 350 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 TMEM252Q8N6L7 170 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 UBAC2Q8NBM4 344 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 OR4D11Q8NGI4 311 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 NPRL2Q8WTW4 380 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CCL17Q92583 94 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 DNAJC30Q96LL9 226 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 OR2M2Q96R28 347 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 OR5M11Q96RB7 305 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 PLEKHF1Q96S99 279 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF382Q96SR6 550 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CDX2Q99626 313 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-204ENST00000399489 SYT15Q9BQS2 421 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 PDCD10Q9BUL8 212 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 C1orf50Q9BV19 199 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 TBL1XR1Q9BZK7 514 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 IDI2-AS1Q9NZ38 188 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CALML5Q9NZT1 146 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 PYCARDQ9ULZ3 195 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 F11RQ9Y624 299 aaKnown RBP3.07□□□□□ -1.92
HMGB1-204ENST00000399489 WSB1Q9Y6I7 421 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 ASTN1O14525 1302 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 THSD7AQ9UPZ6 1657 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 LRRK1Q38SD2 2015 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 MARF1Q9Y4F3 1742 aaKnown RBP3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CDC42BPGQ6DT37 1551 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 ANKRD50Q9ULJ7 1429 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 SMIM26A0A096LP01 95 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 IGHV3-35A0A0C4DH35 117 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 A0A0U1RQV1 116 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 E7EQ34 232 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 FAM72CH0Y354 149 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 TP53I11O14683 189 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 PSPHP1O15172 72 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 EDIL3O43854 480 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 GGCTO75223 188 aaKnown RBP3.07□□□□□ -1.92
HMGB1-204ENST00000399489 STK16O75716 305 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 DHRS3O75911 302 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 DUSP14O95147 198 aaKnown RBP3.07□□□□□ -1.92
HMGB1-204ENST00000399489 TRBV12-3P01733 135 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CD79AP11912 226 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CXCL2P19875 107 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 P2RX1P51575 399 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF133P52736 654 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-204ENST00000399489 TCP10Q12799 353 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 PRR30Q53SZ7 412 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-204ENST00000399489 FAM72AQ5TYM5 149 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 TEX36Q5VZQ5 186 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 SPATA31B1PQ5VZV4 182 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 FAM72DQ6L9T8 149 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 FBXW12Q6X9E4 464 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 TMUB2Q71RG4 321 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 FA2HQ7L5A8 372 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 FAM72BQ86X60 149 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 SLC35F6Q8N357 371 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 Q8NBF4 154 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms