RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ZXDAP98168 799 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 WDR25Q64LD2 544 aaPredicted RBP10.75□□□□□ -0.69
SHMT1-205ENST00000395684 FAM180AQ6UWF9 173 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 LILRB2Q8N423 598 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 THOC3Q96J01 351 aaKnown RBP10.75□□□□□ -0.69
SHMT1-205ENST00000395684 P2RX4Q99571 388 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 OPA3Q9H6K4 179 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 VAX2Q9UIW0 290 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 RNF150Q9ULK6 438 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 MPC1Q9Y5U8 109 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 DOCK7Q96N67 2140 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 ELOA3CA0A087WX78 387 aaPredicted RBP10.75□□□□□ -0.69
SHMT1-205ENST00000395684 OR5B21A6NL26 309 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 FAM166BA8MTA8 275 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 WDR1O75083 606 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 PTBP3O95758 552 aaKnown RBP10.75□□□□□ -0.69
SHMT1-205ENST00000395684 IGKV1D-33P01593 117 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 IGKV1-33P01594 117 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 CD55P08174 381 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 ARR3P36575 388 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 GPX4P36969 197 aaPredicted RBP10.75□□□□□ -0.69
SHMT1-205ENST00000395684 HNF4GQ14541 408 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 DCAF12Q5T6F0 453 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 MRGPRGQ86SM5 289 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 APH1AQ96BI3 265 aa10.75□□□□□ -0.69
SHMT1-205ENST00000395684 TRBV24-1A0A075B6N3 115 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 PIGBOS1A0A0B4J2F0 54 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 MAP1LC3B2A6NCE7 125 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 SIRPB1O00241 398 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 MAGEA5P43359 124 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 HBG1P69891 147 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 HBG2P69892 147 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 ACSF3Q4G176 576 aaPredicted RBP10.74□□□□□ -0.69
SHMT1-205ENST00000395684 TMEM41BQ5BJD5 291 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 SPATA46Q5T0L3 261 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 NUFIP2Q7Z417 695 aaKnown RBP10.74□□□□□ -0.69
SHMT1-205ENST00000395684 RPP25LQ8N5L8 163 aaKnown RBP10.74□□□□□ -0.69
SHMT1-205ENST00000395684 HLA-CQ95604 372 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 MAP1LC3BQ9GZQ8 125 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 RBM7Q9Y580 266 aaKnown RBP10.74□□□□□ -0.69
SHMT1-205ENST00000395684 CHD3Q12873 2000 aaKnown RBP10.74□□□□□ -0.69
SHMT1-205ENST00000395684 CD81P60033 236 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 TLE1Q04724 770 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 PLP2Q04941 152 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 CLN3Q13286 438 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 FGFRL1Q8N441 504 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 TAF15Q92804 592 aaKnown RBP eCLIP10.74□□□□□ -0.69
SHMT1-205ENST00000395684 SNX22Q96L94 193 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 FAM173AQ9BQD7 235 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 PKIBQ9C010 78 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 KCNS2Q9ULS6 477 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 ESPL1Q14674 2120 aa10.74□□□□□ -0.69
SHMT1-205ENST00000395684 FAM186AA6NE01 2351 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 B4E171 279 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 ZNF737O75373 536 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 SYNGR4O95473 234 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 OR2H2O95918 312 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 TSPAN7P41732 249 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 GAMTQ14353 236 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 C3AR1Q16581 482 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 C6orf15Q6UXA7 325 aaPredicted RBP10.73□□□□□ -0.69
SHMT1-205ENST00000395684 ZNF497Q6ZNH5 498 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 WDR86Q86TI4 376 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 TMEM9BQ9NQ34 198 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 TRAPPC2LQ9UL33 140 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 UBE2L5PA0A1B0GUS4 154 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 LRP5LA4QPB2 252 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 HMGB3O15347 200 aaKnown RBP10.73□□□□□ -0.69
SHMT1-205ENST00000395684 OPN1MWP04001 364 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 OPN1MW2P0DN77 364 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 OPN1MW3P0DN78 364 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 CEACAM6P40199 344 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 OR8G2PQ6IF36 304 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 DRAM1Q8N682 238 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 RHOVQ96L33 236 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 CDH20Q9HBT6 801 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 RYDENQ9NUL5 291 aaKnown RBP10.73□□□□□ -0.69
SHMT1-205ENST00000395684 PRSS50Q9UI38 385 aa10.73□□□□□ -0.69
SHMT1-205ENST00000395684 J3QT63 122 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 MT-CO3P00414 261 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 APLNRP35414 380 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 DEFA6Q01524 100 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 SLC38A11Q08AI6 406 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 ZNF600Q6ZNG1 722 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 VASH2Q86V25 355 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 LHX4Q969G2 390 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 PINX1Q96BK5 328 aaKnown RBP10.72□□□□□ -0.69
SHMT1-205ENST00000395684 HIST1H2BLQ99880 126 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 LIN7CQ9NUP9 197 aaKnown RBP10.72□□□□□ -0.69
SHMT1-205ENST00000395684 GFOD1Q9NXC2 390 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 IGHV3-64DA0A0J9YX35 117 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 HOXA6P31267 233 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 TMEM14EPQ6UXP3 125 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 TMEM105Q8N8V8 129 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 OR4X1Q8NH49 305 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 PARD6GQ9BYG4 376 aaPredicted RBP10.72□□□□□ -0.69
SHMT1-205ENST00000395684 TTTY12Q9BZ98 90 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 STRADBQ9C0K7 418 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 CTDSP1Q9GZU7 261 aa10.72□□□□□ -0.69
SHMT1-205ENST00000395684 SLC39A9Q9NUM3 307 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms