RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 MAS1LP35410 378 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 RIPPLY3P57055 190 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 TNFAIP6P98066 277 aaPredicted RBP10.33□□□□□ -0.76
SYNPO-202ENST00000394243 OR52M1Q8NGK5 317 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 TAF15Q92804 592 aaKnown RBP eCLIP10.33□□□□□ -0.76
SYNPO-202ENST00000394243 TMEM210A6NLX4 147 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 CDIPTO14735 213 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 POU2F2P09086 479 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 ZNF735P0CB33 412 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 KIR3DL2P43630 455 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 LSM6P62312 80 aaKnown RBP10.33□□□□□ -0.76
SYNPO-202ENST00000394243 TMEM45BQ96B21 275 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 RNF122Q9H9V4 155 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 FAM206AQ9NX38 181 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 SCN1AP35498 2009 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 ZNF638Q14966 1978 aaKnown RBP10.33□□□□□ -0.76
SYNPO-202ENST00000394243 CHD5Q8TDI0 1954 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 TRGV5A0A0B4J1U4 118 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 C1QCP02747 245 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 KRTCAP3Q53RY4 240 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 SFRP2Q96HF1 295 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 OR8B2Q96RD0 313 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 TAF1P21675 1872 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 SNAI2O43623 268 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 TEX30Q5JUR7 227 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 DOT1LQ8TEK3 1739 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 TOX2Q96NM4 488 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 AMMECR1Q9Y4X0 333 aaPredicted RBP10.32□□□□□ -0.76
SYNPO-202ENST00000394243 OR51B2Q9Y5P1 312 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 LYZL6O75951 148 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 HOXB1P14653 301 aaPredicted RBP10.32□□□□□ -0.76
SYNPO-202ENST00000394243 ZBTB34Q8NCN2 500 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 A8MXK9 166 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 LINC01387J3KSC0 135 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 CCR5P51681 352 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 ZPLD1Q8TCW7 415 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 SYNGR1O43759 233 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 MYOGP15173 224 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 JOSD1Q15040 202 aaPredicted RBP10.32□□□□□ -0.76
SYNPO-202ENST00000394243 HARBI1Q96MB7 349 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 CARHSP1Q9Y2V2 147 aaKnown RBP10.32□□□□□ -0.76
SYNPO-202ENST00000394243 OR4A8P0C604 315 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 HOXA5P20719 270 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 RBFOX2O43251 390 aaKnown RBP eCLIP10.32□□□□□ -0.76
SYNPO-202ENST00000394243 SNRNP200O75643 2136 aaKnown RBP10.32□□□□□ -0.76
SYNPO-202ENST00000394243 GLRX2Q9NS18 164 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 HIGD1AQ9Y241 93 aa10.32□□□□□ -0.76
SYNPO-202ENST00000394243 SCN2AQ99250 2005 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 TMPRSS2O15393 492 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 ARL14EPLP0DKL9 152 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 IZUMO4Q1ZYL8 232 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 TXNDC17Q9BRA2 123 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 CHST5Q9GZS9 411 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 MAP1LC3AQ9H492 121 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 SMCHD1A6NHR9 2005 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 TRBV9A0A0B4J1U6 114 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 PLA2G3Q9NZ20 509 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 PHLPP1O60346 1717 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 ECM29Q5VYK3 1845 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 C1QTNF9BB2RNN3 333 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 TSPAN2O60636 221 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 LGALS7P47929 136 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 EFNB1P98172 346 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 PRSS8Q16651 343 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 MRPL16Q9NX20 251 aaKnown RBP10.31□□□□□ -0.76
SYNPO-202ENST00000394243 GGTLC2Q14390 218 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 SAPCD1Q5SSQ6 148 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 RHBDD2Q6NTF9 364 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 OR1L8Q8NGR8 309 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 ZDHHC16Q969W1 377 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 LGALS3P17931 250 aaKnown RBP10.31□□□□□ -0.76
SYNPO-202ENST00000394243 NUBP1P53384 320 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 C2orf83Q53S99 150 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 ANKRD37Q7Z713 158 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 FBLIM1Q8WUP2 373 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 SLC25A38Q96DW6 304 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 TMEM222Q9H0R3 208 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 MEGF9Q9H1U4 602 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 HSPB7Q9UBY9 170 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 MYO7AQ13402 2215 aa10.31□□□□□ -0.76
SYNPO-202ENST00000394243 H0Y980 276 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 TNFSF10P50591 281 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 MAJINQ3KP22 176 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 TMEM177Q53S58 311 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 WNT5BQ9H1J7 359 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 RAXQ9Y2V3 346 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 TBL2Q9Y4P3 447 aaKnown RBP10.3□□□□□ -0.76
SYNPO-202ENST00000394243 SPCS1Q9Y6A9 102 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 DDX60LQ5H9U9 1706 aaKnown RBP10.3□□□□□ -0.76
SYNPO-202ENST00000394243 LIPT2A6NK58 231 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 SSTR5P35346 364 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 ZIC1Q15915 447 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 ISXQ2M1V0 245 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 MIC13Q5XKP0 118 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 SFTPA2Q8IWL1 248 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 SFTPA1Q8IWL2 248 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 NRTNQ99748 197 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 LRRC61Q9BV99 259 aa10.3□□□□□ -0.76
SYNPO-202ENST00000394243 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.3□□□□□ -0.76
SYNPO-202ENST00000394243 CCL7P80098 99 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms