RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 FOXI3A8MTJ6 420 aaPredicted RBP6.33□□□□□ -1.4
VPS13A-202ENST00000357409 PLPP2O43688 288 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 MPDU1O75352 247 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 TEX30Q5JUR7 227 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 OR4S2Q8NH73 311 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 SRSF12Q8WXF0 261 aaKnown RBP6.33□□□□□ -1.4
VPS13A-202ENST00000357409 C1RLQ9NZP8 487 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 IGKV1D-43A0A0B4J1Z2 117 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 M0R381 172 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 ZNF25P17030 456 aaPredicted RBP6.33□□□□□ -1.4
VPS13A-202ENST00000357409 HIST1H1AQ02539 215 aaPredicted RBP6.33□□□□□ -1.4
VPS13A-202ENST00000357409 OR10J6PQ8NGY7 276 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 NPIPB3Q92617 1050 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 ZNF586Q9NXT0 402 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 C4orf51C9J302 202 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 KLF4O43474 513 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 MRPS14O60783 128 aaKnown RBP6.33□□□□□ -1.4
VPS13A-202ENST00000357409 MBPP02686 304 aaPredicted RBP6.33□□□□□ -1.4
VPS13A-202ENST00000357409 EWSR1Q01844 656 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS13A-202ENST00000357409 YIPF6Q96EC8 236 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 ASCC3Q8N3C0 2202 aaKnown RBP6.33□□□□□ -1.4
VPS13A-202ENST00000357409 NGFRP08138 427 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 RPL39P5Q59GN2 51 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 UBE2E2Q96LR5 201 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 EVA1AQ9H8M9 152 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 PLAC1Q9HBJ0 212 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 CA10Q9NS85 328 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 TMEM38BQ9NVV0 291 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 SIGLEC1Q9BZZ2 1709 aa6.33□□□□□ -1.4
VPS13A-202ENST00000357409 MYH3P11055 1940 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 SS18L1O75177 396 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-202ENST00000357409 HOXD3P31249 432 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-202ENST00000357409 CCKARP32238 428 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 MPV17P39210 176 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 FADS6Q8N9I5 356 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 ADRB1P08588 477 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 GZMHP20718 246 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 SLC6A1P30531 599 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 RAB7AP51149 207 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 CX3CL1P78423 397 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 FAM53AQ6NSI3 398 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-202ENST00000357409 SPSB2Q99619 263 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 RNF122Q9H9V4 155 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 SOX21Q9Y651 276 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-202ENST00000357409 C7orf71A4D174 169 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 MFSD2BA6NFX1 497 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 BMI1P35226 326 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 C12orf73Q69YU5 71 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 SYS1Q8N2H4 156 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 IGKV1-8A0A0C4DH67 115 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 ZNF735P0CB33 412 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 LRRC75BQ2VPJ9 315 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 PLPPR5Q32ZL2 321 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 HMGCLL1Q8TB92 370 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 IGFBPL1Q8WX77 278 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 TMEM18Q96B42 140 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 GDF15Q99988 308 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 GSX2Q9BZM3 304 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 JKAMPQ9P055 326 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 MPC1Q9Y5U8 109 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 B4E171 279 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 RND2P52198 227 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 SPCS3P61009 180 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 FAM216BQ8N7L0 139 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 OR52M1Q8NGK5 317 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 GMPPAQ96IJ6 420 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-202ENST00000357409 WNT5BQ9H1J7 359 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 PPP1R3EQ9H7J1 279 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 FKBP11Q9NYL4 201 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 FOXA2Q9Y261 457 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-202ENST00000357409 URB1O60287 2271 aaKnown RBP6.32□□□□□ -1.4
VPS13A-202ENST00000357409 MBP02144 154 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 GPX1P07203 203 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 GTF2H5Q6ZYL4 71 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 PAXXQ9BUH6 204 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 MYH8P13535 1937 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 AP4M1O00189 453 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 TMEM50BP56557 158 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 FAM110DQ8TAY7 271 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-202ENST00000357409 C12orf57Q99622 126 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 OR5AC2Q9NZP5 309 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 NAV1Q8NEY1 1877 aa6.32□□□□□ -1.4
VPS13A-202ENST00000357409 CRYBG1Q9Y4K1 1723 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 TEX50A0A1B0GTY4 177 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 FXYD1O00168 92 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 VSIG8P0DPA2 414 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 CRISP2P16562 243 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 ZNF680Q8NEM1 530 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 GABARAPL3Q9BY60 117 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 NDUFB4O95168 129 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 SCGB1A1P11684 91 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 CHRDL1Q9BU40 450 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 C1QBP02746 253 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 LINC00869P0C866 280 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 GPR183P32249 361 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 MAS1LP35410 378 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 TMEM78Q5T7P6 136 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 SNRNP40Q96DI7 357 aaKnown RBP6.31□□□□□ -1.4
VPS13A-202ENST00000357409 PRSS23O95084 383 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 MPC2O95563 127 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms