RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 SHANK1Q9Y566 2161 aa11.48□□□□□ -0.57
COL2A1-201ENST00000337299 PHF3Q92576 2039 aaKnown RBP11.48□□□□□ -0.57
COL2A1-201ENST00000337299 WDR81Q562E7 1941 aa11.48□□□□□ -0.57
COL2A1-201ENST00000337299 ABCA1O95477 2261 aa11.48□□□□□ -0.57
COL2A1-201ENST00000337299 IGKV1D-8A0A087WSZ0 117 aa11.48□□□□□ -0.57
COL2A1-201ENST00000337299 CAPZBP47756 277 aa11.48□□□□□ -0.57
COL2A1-201ENST00000337299 SAPCD1Q5SSQ6 148 aa11.48□□□□□ -0.57
COL2A1-201ENST00000337299 TRIB1Q96RU8 372 aa11.48□□□□□ -0.57
COL2A1-201ENST00000337299 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.48□□□□□ -0.57
COL2A1-201ENST00000337299 A0A1B0GU03 582 aa11.48□□□□□ -0.57
COL2A1-201ENST00000337299 CA6P23280 308 aa11.48□□□□□ -0.57
COL2A1-201ENST00000337299 RBMXL3Q8N7X1 1067 aaKnown RBP11.48□□□□□ -0.57
COL2A1-201ENST00000337299 MIEN1Q9BRT3 115 aa11.48□□□□□ -0.57
COL2A1-201ENST00000337299 OR1A1Q9P1Q5 309 aa11.48□□□□□ -0.57
COL2A1-201ENST00000337299 CHD3Q12873 2000 aaKnown RBP11.47□□□□□ -0.57
COL2A1-201ENST00000337299 SPTY2D1-AS1A0A0U1RR47 76 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 LDLRAD4O15165 306 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 VWA1Q6PCB0 445 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 RNF144BQ7Z419 303 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 TRAV38-1A0A0B4J264 116 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 CLDN15P56746 228 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 SERF2P84101 59 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 MAJINQ3KP22 176 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 IGHV3-43A0A0B4J1X8 118 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 EPOPA6NHQ4 379 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 LIPT2A6NK58 231 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 J3QR89 54 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 VAMP5O95183 116 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 IGHV3-43DP0DP04 118 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 SRP14P37108 136 aaKnown RBP11.47□□□□□ -0.57
COL2A1-201ENST00000337299 S100A7AQ86SG5 101 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 TMEM251Q8N6I4 163 aa11.47□□□□□ -0.57
COL2A1-201ENST00000337299 TAF15Q92804 592 aaKnown RBP eCLIP11.47□□□□□ -0.57
COL2A1-201ENST00000337299 GSX1Q9H4S2 264 aaPredicted RBP11.47□□□□□ -0.57
COL2A1-201ENST00000337299 FOXS1O43638 330 aa11.46□□□□□ -0.57
COL2A1-201ENST00000337299 OR2D3Q8NGH3 330 aa11.46□□□□□ -0.57
COL2A1-201ENST00000337299 GPR146Q96CH1 333 aa11.46□□□□□ -0.57
COL2A1-201ENST00000337299 C12orf49Q9H741 205 aa11.46□□□□□ -0.57
COL2A1-201ENST00000337299 PPIAL4AQ9Y536 164 aa11.46□□□□□ -0.57
COL2A1-201ENST00000337299 LHFPL6Q9Y693 200 aa11.46□□□□□ -0.57
COL2A1-201ENST00000337299 G6PCP35575 357 aa11.46□□□□□ -0.57
COL2A1-201ENST00000337299 FXYD3Q14802 87 aa11.46□□□□□ -0.57
COL2A1-201ENST00000337299 TMEM256Q8N2U0 113 aa11.46□□□□□ -0.57
COL2A1-201ENST00000337299 LRFN3Q9BTN0 628 aa11.46□□□□□ -0.57
COL2A1-201ENST00000337299 ASCL3Q9NQ33 180 aa11.46□□□□□ -0.57
COL2A1-201ENST00000337299 SPINT2O43291 252 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 NHLH1Q02575 133 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 LDLRAD2Q5SZI1 272 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 FAM19A2Q8N3H0 131 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 OR4P4Q8NGL7 312 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 ZNF519Q8TB69 540 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 STRADBQ9C0K7 418 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 PGPEP1LA6NFU8 196 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 TOX3O15405 576 aaPredicted RBP11.46□□□□□ -0.58
COL2A1-201ENST00000337299 HOXC4P09017 264 aaPredicted RBP11.46□□□□□ -0.58
COL2A1-201ENST00000337299 IGFBP3P17936 291 aaPredicted RBP11.46□□□□□ -0.58
COL2A1-201ENST00000337299 CXorf67Q86X51 503 aaPredicted RBP11.46□□□□□ -0.58
COL2A1-201ENST00000337299 BMPERQ8N8U9 685 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 CTHRC1Q96CG8 243 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 ZNF488Q96MN9 340 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 P2RX4Q99571 388 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 OR2D2Q9H210 308 aa11.46□□□□□ -0.58
COL2A1-201ENST00000337299 PLXNA1Q9UIW2 1896 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 SERTM2A0A1B0GWG4 89 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 SLC17A3O00476 420 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 F2RP25116 425 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 WDR73Q6P4I2 378 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 TEX38Q6PEX7 206 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 SELENOHQ8IZQ5 122 aaKnown RBP11.45□□□□□ -0.58
COL2A1-201ENST00000337299 BEND2Q8NDZ0 799 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 FOXB1Q99853 325 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 C5orf67F2Z3F1 127 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 SERF1AO75920 110 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 SRIP30626 198 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 KIR2DL1P43626 348 aaPredicted RBP11.45□□□□□ -0.58
COL2A1-201ENST00000337299 GPR12P47775 334 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 COMPP49747 757 aaPredicted RBP11.45□□□□□ -0.58
COL2A1-201ENST00000337299 RPL23P62829 140 aaKnown RBP11.45□□□□□ -0.58
COL2A1-201ENST00000337299 CYP2G1PQ6ZSU1 146 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 MOB3AQ96BX8 217 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 TM4SF19Q96DZ7 209 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 SCARF2Q96GP6 870 aaPredicted RBP11.45□□□□□ -0.58
COL2A1-201ENST00000337299 LAMTOR2Q9Y2Q5 125 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 A0A0A6YYD4 124 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 GAGE10A6NGK3 116 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 BCL3P20749 454 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 D2HGDHQ8N465 521 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 SP7Q8TDD2 431 aaPredicted RBP11.45□□□□□ -0.58
COL2A1-201ENST00000337299 RAB37Q96AX2 223 aa11.45□□□□□ -0.58
COL2A1-201ENST00000337299 RIMS4Q9H426 269 aaPredicted RBP11.45□□□□□ -0.58
COL2A1-201ENST00000337299 A0A1B0GUS0 222 aa11.44□□□□□ -0.58
COL2A1-201ENST00000337299 MNX1P50219 401 aaPredicted RBP11.44□□□□□ -0.58
COL2A1-201ENST00000337299 TDGF1P3P51864 188 aa11.44□□□□□ -0.58
COL2A1-201ENST00000337299 MFAP2P55001 183 aa11.44□□□□□ -0.58
COL2A1-201ENST00000337299 UNQ5815/PRO19632Q6UWF5 114 aa11.44□□□□□ -0.58
COL2A1-201ENST00000337299 OR51G1Q8NGK1 321 aa11.44□□□□□ -0.58
COL2A1-201ENST00000337299 OR2Y1Q8NGV0 311 aa11.44□□□□□ -0.58
COL2A1-201ENST00000337299 UCN2Q96RP3 112 aa11.44□□□□□ -0.58
COL2A1-201ENST00000337299 DIRC2Q96SL1 478 aa11.44□□□□□ -0.58
COL2A1-201ENST00000337299 B4GALT7Q9UBV7 327 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms