RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 CACNA1CQ13936 2221 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 RPL36A-HNRNPH2H7BZ11 118 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 LSM6P62312 80 aaKnown RBP10.98□□□□□ -0.65
SDC3-201ENST00000336798 FAM53AQ6NSI3 398 aaPredicted RBP10.98□□□□□ -0.65
SDC3-201ENST00000336798 ZPLD1Q8TCW7 415 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 GPA33Q99795 319 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 LOC107984156A0A0G2JMH3 177 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 A1L4Q6 167 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 K7N7A8 449 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 PMS2CLQ68D20 193 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 ARL17AQ8IVW1 177 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 A0A1B0GU03 582 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 TMEM262E9PQX1 116 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 ISLRO14498 428 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 KLF9Q13886 244 aaPredicted RBP10.98□□□□□ -0.65
SDC3-201ENST00000336798 TMEM78Q5T7P6 136 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 UNQ5815/PRO19632Q6UWF5 114 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 DDB2Q92466 427 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 SLC25A33Q9BSK2 321 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 CBLN4Q9NTU7 201 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 ZDHHC8Q9ULC8 765 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 IGHV3-35A0A0C4DH35 117 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 CD74P04233 296 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 OTX1P32242 354 aaPredicted RBP10.98□□□□□ -0.65
SDC3-201ENST00000336798 DMKNQ6E0U4 476 aaPredicted RBP10.98□□□□□ -0.65
SDC3-201ENST00000336798 OR4A5Q8NH83 315 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 DUX5Q96PT3 197 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 FOXJ2Q9P0K8 574 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 CEACAM18A8MTB9 384 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 HOXC4P09017 264 aaPredicted RBP10.97□□□□□ -0.65
SDC3-201ENST00000336798 CD99P14209 185 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 INO80CQ6PI98 192 aaPredicted RBP10.97□□□□□ -0.65
SDC3-201ENST00000336798 TMEM52Q8NDY8 209 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 CISD1Q9NZ45 108 aaKnown RBP10.97□□□□□ -0.65
SDC3-201ENST00000336798 NEU3Q9UQ49 428 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 STPG1Q5TH74 334 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 FAM74A4Q5TZK3 123 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 SGK494Q96LW2 274 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 GPHA2Q96T91 129 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 SCN3AQ9NY46 2000 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 H3BQ15 152 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 RELBQ01201 579 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 ATP1A1-AS1Q5TC04 95 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 ITLN1Q8WWA0 313 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 ASB5Q8WWX0 329 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 MOB4Q9Y3A3 225 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 HYPMO75409 117 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 RUNX1Q01196 453 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 DNLZQ5SXM8 178 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 DCTN5Q9BTE1 182 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 MYO7AQ13402 2215 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 NRAPQ86VF7 1730 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 BGLAPP02818 100 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 FAM106CPP0CH98 169 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 CCDC144NLQ6NUI1 221 aa10.97□□□□□ -0.65
SDC3-201ENST00000336798 MRPL13Q9BYD1 178 aaKnown RBP10.97□□□□□ -0.65
SDC3-201ENST00000336798 LAMA4Q16363 1823 aa10.96□□□□□ -0.65
SDC3-201ENST00000336798 PDE6DO43924 150 aa10.96□□□□□ -0.65
SDC3-201ENST00000336798 IGHV3-23P01764 117 aa10.96□□□□□ -0.65
SDC3-201ENST00000336798 FCGR2BP31994 310 aaPredicted RBP10.96□□□□□ -0.65
SDC3-201ENST00000336798 GAGE10A6NGK3 116 aa10.96□□□□□ -0.65
SDC3-201ENST00000336798 IGHV3-48P01763 117 aa10.96□□□□□ -0.65
SDC3-201ENST00000336798 GCSAMLQ5JQS6 135 aa10.96□□□□□ -0.65
SDC3-201ENST00000336798 MTURNQ8N3F0 131 aa10.96□□□□□ -0.65
SDC3-201ENST00000336798 SF3B6Q9Y3B4 125 aaKnown RBP10.96□□□□□ -0.65
SDC3-201ENST00000336798 TMEM210A6NLX4 147 aa10.96□□□□□ -0.65
SDC3-201ENST00000336798 ZNF658BQ4V348 819 aaPredicted RBP10.96□□□□□ -0.65
SDC3-201ENST00000336798 ANGPTL4Q9BY76 406 aa10.96□□□□□ -0.65
SDC3-201ENST00000336798 COLQQ9Y215 455 aaPredicted RBP10.96□□□□□ -0.65
SDC3-201ENST00000336798 A0A1W2PQD3 144 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 OR2A4O95047 310 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 CRHP06850 196 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 SAPCD1Q5SSQ6 148 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 PGLYRP4Q96LB8 373 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 OR2A7Q96R45 310 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 GGACTQ9BVM4 153 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 TLNRD1Q9H1K6 362 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 ATG2BQ96BY7 2078 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 DIRC3C9JPN6 131 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 FTH1P19P0C7X4 201 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 KLHDC2Q9Y2U9 406 aa10.96□□□□□ -0.66
SDC3-201ENST00000336798 CENPVL1A0A0U1RR11 272 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 PF4P02776 101 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 VSIG8P0DPA2 414 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 MRPL30Q8TCC3 161 aaKnown RBP10.95□□□□□ -0.66
SDC3-201ENST00000336798 IGHV3-66A0A0C4DH42 116 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 NUDT3O95989 172 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 HBZP02008 142 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 UCP2P55851 309 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 SURF2Q15527 256 aaPredicted RBP10.95□□□□□ -0.66
SDC3-201ENST00000336798 TGIF1Q15583 401 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 CARFQ8N187 725 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 SYT8Q8NBV8 401 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 CHAC2Q8WUX2 184 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 WDFY2Q96P53 400 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 KLK13Q9UKR3 277 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 RAXQ9Y2V3 346 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 BRWD1Q9NSI6 2320 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 ZFP30Q9Y2G7 519 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 IGHV3OR16-13A0A075B7E8 117 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms