RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 HKR1P10072 659 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 CXCL12P48061 93 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 COL9A2Q14055 689 aaPredicted RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 C6orf15Q6UXA7 325 aaPredicted RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 FAM222BQ8WU58 562 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 C2orf88Q9BSF0 95 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 AICDAQ9GZX7 198 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 GHITMQ9H3K2 345 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 PHLDA3Q9Y5J5 127 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 DDX60LQ5H9U9 1706 aaKnown RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 PLXND1Q9Y4D7 1925 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 TRAV8-2A0A0B4J237 113 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 TRAV39A0A0B4J263 110 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 A0A1W2PNR3 127 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 DHHO43323 396 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 HYPMO75409 117 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 IGHV4-34P06331 123 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 ATP6V0CP27449 155 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 SPATA46Q5T0L3 261 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 DEFB108BQ8NET1 73 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 BAHD1Q8TBE0 780 aaPredicted RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 QTRT1Q9BXR0 403 aaKnown RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 WDR13Q9H1Z4 485 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 ASCL3Q9NQ33 180 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 PCDH15Q96QU1 1955 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 NKX2-6A6NCS4 301 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 NMBP08949 121 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 RPS4XP62701 263 aaKnown RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 TSPO2Q5TGU0 170 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 ABHD14AQ9BUJ0 271 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 SMOC1Q9H4F8 434 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 MBD1Q9UIS9 605 aaPredicted RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 TCFL5Q9UL49 500 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 ROM1Q03395 351 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 RRN3P1Q2M238 152 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 ZNF764Q96H86 408 aaPredicted RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 AURKAIP1Q9NWT8 199 aaPredicted RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 A0A1W2PQM1 296 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 CA11O75493 328 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 F12P00748 615 aaPredicted RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 KLK2P20151 261 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 RBM11P57052 281 aaKnown RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 WSB2Q9NYS7 404 aaPredicted RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 AUP1Q9Y679 476 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 A0A0A6YYD5 115 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 PPYP01298 95 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 TMEM95Q3KNT9 176 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 C2orf83Q53S99 150 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 AQP10Q96PS8 301 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 TNRC6CQ9HCJ0 1690 aaKnown RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 C7orf71A4D174 169 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 SELENOTP62341 195 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 HIST1H1AQ02539 215 aaPredicted RBP5.44□□□□□ -1.54
CSMD1-201ENST00000335551 GAPTQ8N292 157 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 OR2V1Q8NHB1 315 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 MMP17Q9ULZ9 603 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 KCNE3Q9Y6H6 103 aa5.44□□□□□ -1.54
CSMD1-201ENST00000335551 C7orf66A4D0T2 115 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 LRRC75BQ2VPJ9 315 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 ANKRD34AQ69YU3 496 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 MRGPRFQ96AM1 343 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 TOX2Q96NM4 488 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 PRRC2AP48634 2157 aaKnown RBP5.43□□□□□ -1.54
CSMD1-201ENST00000335551 FTH1P19P0C7X4 201 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 RCC1P18754 421 aaPredicted RBP5.43□□□□□ -1.54
CSMD1-201ENST00000335551 TNXAQ16473 311 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 FGF13Q92913 245 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 TMEM30AQ9NV96 361 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 GREB1LQ9C091 1923 aaPredicted RBP5.43□□□□□ -1.54
CSMD1-201ENST00000335551 OTX1P32242 354 aaPredicted RBP5.43□□□□□ -1.54
CSMD1-201ENST00000335551 SRSF4Q08170 494 aaKnown RBP5.43□□□□□ -1.54
CSMD1-201ENST00000335551 ZNF124Q15973 351 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 CYB5R2Q6BCY4 276 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 MIXL1Q9H2W2 232 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 ABCA3Q99758 1704 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 RPS27P42677 84 aaKnown RBP5.43□□□□□ -1.54
CSMD1-201ENST00000335551 MAJINQ3KP22 176 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 C12orf76Q8N812 135 aaPredicted RBP5.43□□□□□ -1.54
CSMD1-201ENST00000335551 ZNF441Q8N8Z8 693 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 C5orf30Q96GV9 206 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 IGHV3-64DA0A0J9YX35 117 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 H0Y980 276 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 CA6P23280 308 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 PRDX2P32119 198 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 AGERQ15109 404 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 ZBP1Q9H171 429 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 CSPG4Q6UVK1 2322 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 TRBV23-1A0A0A0MS06 115 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 A0A1B0GW15 77 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 CDAP32320 146 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 HBBP68871 147 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 C17orf47Q8NEP4 570 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 NT5CQ8TCD5 201 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 ADAMTSL3P82987 1691 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 ZNF729A6NN14 1252 aaPredicted RBP5.43□□□□□ -1.54
CSMD1-201ENST00000335551 VENTXO95231 258 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 MVDP53602 400 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 ZNF117Q03924 483 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 DUSP2Q05923 314 aa5.43□□□□□ -1.54
CSMD1-201ENST00000335551 CEACAM16Q2WEN9 425 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms