RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 Q6ZPA2 131 aa12.69□□□□□ -0.38
CLN3-201ENST00000333496 NR2C2APQ86WQ0 139 aa12.69□□□□□ -0.38
CLN3-201ENST00000333496 OR1L1Q8NH94 360 aa12.69□□□□□ -0.38
CLN3-201ENST00000333496 PKD1L1Q8TDX9 2849 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 TRAPPC2P0DI81 140 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 TRAPPC2BP0DI82 140 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 RAB3BP20337 219 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 EFNB2P52799 333 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 TMEM50BP56557 158 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 C6orf183Q5T699 404 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 PRR18Q8N4B5 295 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 OR4C13Q8NGP0 309 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 SGMS2Q8NHU3 365 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 NPFFR1Q9GZQ6 430 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 MIXL1Q9H2W2 232 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 ZNF702PQ9H963 129 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 TAF9BQ9HBM6 251 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 STEAP1Q9UHE8 339 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 ADAM30Q9UKF2 790 aa12.68□□□□□ -0.38
CLN3-201ENST00000333496 AMMECR1Q9Y4X0 333 aaPredicted RBP12.68□□□□□ -0.38
CLN3-201ENST00000333496 TMEM272A0A1B0GTI8 110 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 A0A1W2PPI3 338 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 FABP12A6NFH5 140 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 IFITM5A6NNB3 132 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 OOSP1A8MZH6 123 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 BRS3P32247 399 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 MADCAM1Q13477 382 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 MZT2AQ6P582 158 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 Q6ZS46 218 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 LINC00311Q8N616 119 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 ZNF439Q8NDP4 499 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 TOMM40LQ969M1 308 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 RPEQ96AT9 228 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 DIRAS2Q96HU8 199 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 URM1Q9BTM9 101 aaKnown RBP12.67□□□□□ -0.38
CLN3-201ENST00000333496 PLEKHJ1Q9NW61 149 aa12.67□□□□□ -0.38
CLN3-201ENST00000333496 FAM90A9PA6NNJ1 464 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 PDCD5O14737 125 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 SLC31A2O15432 143 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 SPINT2O43291 252 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 NAPSAO96009 420 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 VEGFCP49767 419 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 ZNF134P52741 427 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 BLCAPP62952 87 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 HABP2Q14520 560 aaPredicted RBP12.66□□□□□ -0.38
CLN3-201ENST00000333496 SFXN4Q6P4A7 337 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 TRAT1Q6PIZ9 186 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 NRARPQ7Z6K4 114 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 Q8N2B8 174 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 C8orf31Q8N9H6 132 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 OR10X1Q8NGY0 326 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 ACOT12Q8WYK0 555 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 CFHR4Q92496 578 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 TET2Q6N021 2002 aaPredicted RBP12.66□□□□□ -0.38
CLN3-201ENST00000333496 TIMM23O14925 209 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 ARHGDIBP52566 201 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 BAK1Q16611 211 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 Q3ZCU0 254 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 CCDC144NLQ6NUI1 221 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 ZNF880Q6PDB4 577 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 OCSTAMPQ9BR26 566 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 HDHD3Q9BSH5 251 aaPredicted RBP12.66□□□□□ -0.38
CLN3-201ENST00000333496 SERTAD4Q9NUC0 356 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 HSF4Q9ULV5 492 aa12.66□□□□□ -0.38
CLN3-201ENST00000333496 A0A0B4J203 849 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 NOTOA8MTQ0 251 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 CCNKO75909 580 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 HLA-DQB1P01920 261 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 MNDAP41218 407 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 HMGN3Q15651 99 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 TMEM30BQ3MIR4 351 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 CT45A1Q5HYN5 189 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 PLAC9Q5JTB6 97 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 IDNKQ5T6J7 187 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 SLC25A48Q6ZT89 311 aaKnown RBP12.65□□□□□ -0.38
CLN3-201ENST00000333496 DRAM1Q8N682 238 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 OR10V1Q8NGI7 309 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 OR56B4Q8NH76 319 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 OR2T6Q8NHC8 308 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 CT45A3Q8NHU0 189 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 ST6GALNAC6Q969X2 333 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 KCTD12Q96CX2 325 aaKnown RBP12.65□□□□□ -0.38
CLN3-201ENST00000333496 ARHGAP5-AS1Q96IT6 56 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 RAB9BQ9NP90 201 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 GNG12Q9UBI6 72 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 AK3Q9UIJ7 227 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 ZNF221Q9UK13 617 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 RAB22AQ9UL26 194 aa12.65□□□□□ -0.38
CLN3-201ENST00000333496 HSD17B6O14756 317 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 RFX2P48378 723 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 RAB7AP51149 207 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 ZNF816Q0VGE8 651 aaPredicted RBP12.64□□□□□ -0.39
CLN3-201ENST00000333496 GNMTQ14749 295 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 MOGAT2Q3SYC2 334 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 MORN2Q502X0 79 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 PYDC2Q56P42 97 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 PRR31Q5SQ13 230 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 Q6ZTK2 550 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 C16orf82Q7Z2V1 217 aa12.64□□□□□ -0.39
CLN3-201ENST00000333496 OR8H3Q8N146 312 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms