RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CCDC160A6NGH7 325 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 H3BMQ9 156 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 HSD17B6O14756 317 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 XRCC3O43542 346 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 BRS3P32247 399 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 SOX6P35712 828 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 MNDAP41218 407 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 REG1BP48304 166 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 RAB7AP51149 207 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 DYNLT3P51808 116 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 PITPNAQ00169 270 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 TMEM69Q5SWH9 247 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 OR2AK2Q8NG84 335 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 OR4A4PQ8NGN8 299 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 ST6GALNAC5Q9BVH7 336 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 AUNIPQ9H7T9 357 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 TCF19Q9Y242 345 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 CEPT1Q9Y6K0 416 aa12.79□□□□□ -0.36
CCDC28A-201ENST00000332797 SSX5O60225 188 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 HPGDSO60760 199 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 GSTT2P0CG29 244 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 GSTT2BP0CG30 244 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 HKR1P10072 659 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 PTHLHP12272 177 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 ZBTB25P24278 435 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 CD24P25063 80 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 CEACAM6P40199 344 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 HERPUD1Q15011 391 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 DHRS7BQ6IAN0 325 aaPredicted RBP12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 TMEM219Q86XT9 240 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 LYG1Q8N1E2 194 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 PARP12Q9H0J9 701 aaKnown RBP12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 IGKV1D-8A0A087WSZ0 117 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 A0A1W2PPI3 338 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 TIMM23O14925 209 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 BET1O15155 118 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 APOA1P02647 267 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 GAPDHP04406 335 aaKnown RBP12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 TAS2R20P59543 309 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 RPL15P61313 204 aaKnown RBP12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 ZNF816Q0VGE8 651 aaPredicted RBP12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 SRSF7Q16629 238 aaKnown RBP eCLIP12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 IGSF11Q5DX21 431 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 LY6G6FQ5SQ64 297 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 LIAT1Q6ZQX7 453 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 Q6ZS49 121 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 OR56B4Q8NH76 319 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 CMTM3Q96MX0 182 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 CABLES2Q9BTV7 478 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 C1RLQ9NZP8 487 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 NDUFA13Q9P0J0 144 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 PITPNC1Q9UKF7 332 aa12.78□□□□□ -0.36
CCDC28A-201ENST00000332797 TMEM89A2RUT3 159 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 A6NDX4 124 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 FAM25AB3EWG3 89 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 FAM25CB3EWG5 89 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 FAM25GB3EWG6 89 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 ST8SIA5O15466 376 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 CHST1O43916 411 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 ELK1P19419 428 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 CCBE1Q6UXH8 406 aaPredicted RBP12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 OR8H3Q8N146 312 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 DRAM1Q8N682 238 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 DYNC2LI1Q8TCX1 351 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 CAPSLQ8WWF8 208 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 RTN4IP1Q8WWV3 396 aaPredicted RBP12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 ST6GALNAC6Q969X2 333 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 RAB18Q9NP72 206 aa12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 CCDC59Q9P031 241 aaKnown RBP12.77□□□□□ -0.37
CCDC28A-201ENST00000332797 IGHV1-3A0A0C4DH29 117 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 SMIM31A0A1B0GVY4 71 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 LPLP06858 475 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 ZNF137PP52743 207 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 RAG2P55895 527 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 RELBQ01201 579 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 MOB3BQ86TA1 216 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 TGIF2LXQ8IUE1 241 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 OR10J5Q8NHC4 309 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 EDARADDQ8WWZ3 215 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 CFHR4Q92496 578 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 C11orf54Q9H0W9 315 aaPredicted RBP12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 IFI27L2Q9H2X8 130 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 RDH8Q9NYR8 311 aa12.76□□□□□ -0.37
CCDC28A-201ENST00000332797 SAA2-SAA4A0A096LPE2 208 aa12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 TRBV6-7A0A0A0MS04 114 aa12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 IGHV3-72A0A0B4J1Y9 119 aa12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 MEIS3P1A6NDR6 274 aa12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 TXNL1O43396 289 aa12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 SNRNP70P08621 437 aaKnown RBP12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 SAA2P0DJI9 122 aaPredicted RBP12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 OR3A3P47888 321 aa12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 FOXL1Q12952 345 aa12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 FBLN7Q53RD9 439 aa12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 ODF3L1Q8IXM7 274 aa12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 GVQW1Q8N7I0 195 aa12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 GINS4Q9BRT9 223 aa12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 MRPS7Q9Y2R9 242 aaKnown RBP12.75□□□□□ -0.37
CCDC28A-201ENST00000332797 ITGB1BP1O14713 200 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 RGS5O15539 181 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 LANCL1O43813 399 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms