RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 GGCTO75223 188 aaKnown RBP11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 ARL4DP49703 201 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 RBM11P57052 281 aaKnown RBP11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 HLA-BQ31612 363 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 TMEM41BQ5BJD5 291 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 CLEC18CQ8NCF0 446 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 SPSB1Q96BD6 273 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 DERL1Q9BUN8 251 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 TRAV39A0A0B4J263 110 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 TRBV11-1A0A0K0K1C0 115 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 F2Z2F3 143 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 M0QZK8 103 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 AQP7O14520 342 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 OTX1P32242 354 aaPredicted RBP11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 LRRC75BQ2VPJ9 315 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 C16orf54Q6UWD8 224 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 PATZ1Q9HBE1 687 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 LAMA5O15230 3695 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 CACNA1DQ01668 2161 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 ZNF816-ZNF321PA0A0X1KG74 233 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 IFNA1P01562 189 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 ADMP35318 185 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 PTGDSP41222 190 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 OR1D5P58170 312 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 RPL15P61313 204 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 PLCXD3Q63HM9 321 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 TMEM211Q6ICI0 200 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 CISD2Q8N5K1 135 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 SVIPQ8NHG7 77 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 FAM122AQ96E09 287 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 MIEN1Q9BRT3 115 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 GPR35Q9HC97 309 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 RNF114Q9Y508 228 aa11.46□□□□□ -0.57
CCDC88C-201ENST00000331194 EXPH5Q8NEV8 1989 aa11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 PRRC2CQ9Y520 2896 aaKnown RBP11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 ITGB1BP1O14713 200 aa11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 IGKV1-39P01597 117 aa11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 IGKV1D-39P04432 117 aa11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 IL6RP08887 468 aaPredicted RBP11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 C1QTNF9P0C862 333 aa11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 ZNF16P17020 682 aaPredicted RBP11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 MMDQ15546 238 aa11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 ZNF611Q8N823 705 aa11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 OR5P3Q8WZ94 311 aa11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 TP53TG3Q9ULZ0 132 aa11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 CACNA1EQ15878 2313 aa11.46□□□□□ -0.58
CCDC88C-201ENST00000331194 A8MXE2 369 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 TLX3O43711 291 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 SYNGR2O43760 224 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 PSMB3P49720 205 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 HIST1H3AP68431 136 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 TPTE2P1Q5T6R2 138 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 C20orf204Q6ZNR8 217 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 ZNF114Q8NC26 417 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 OR1L6Q8NGR2 347 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 SPTSSAQ969W0 71 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 ZNF501Q96CX3 271 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 AGMATQ9BSE5 352 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 WDR61Q9GZS3 305 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 PLSCR2Q9NRY7 297 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 TMEM106BQ9NUM4 274 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 COLQQ9Y215 455 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 PTRH2Q9Y3E5 179 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 FAM186AA6NE01 2351 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 AQP7P3A6NL99 342 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 DHHO43323 396 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 YPEL1O60688 119 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 SERPINE2P07093 398 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 FRMD6-AS1P0C7T7 363 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 CD38P28907 300 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 PTTG1IPP53801 180 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 UBE2G2P60604 165 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 CNN3Q15417 329 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 ALKBH3Q96Q83 286 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 YPEL2Q96QA6 119 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 HSPB9Q9BQS6 159 aa11.45□□□□□ -0.58
CCDC88C-201ENST00000331194 C20orf202A1L168 122 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 G3V3Y1 287 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 BCL3P20749 454 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 COL8A2P25067 703 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 F2RP25116 425 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 MPLP40238 635 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 LINC00310P59036 64 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 USF3Q68DE3 2245 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 LEMD1Q68G75 181 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 TAF15Q92804 592 aaKnown RBP eCLIP11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 TMEM204Q9BSN7 226 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 RAB7AP51149 207 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 CFHR1Q03591 330 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 ASCL4Q6XD76 172 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 OR5D13Q8NGL4 314 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 CMTM2Q8TAZ6 248 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 KLHDC7BQ96G42 594 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 ABHD14BQ96IU4 210 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 CRIM1Q9NZV1 1036 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 DOCK7Q96N67 2140 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 TNFSF13O75888 250 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 NAPSAO96009 420 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 FASLGP48023 281 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 SOX8P57073 446 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms