RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 EFNB2P52799 333 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 B4GALNT1Q00973 533 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 ZNF273Q14593 569 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 RNPS1Q15287 305 aaKnown RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 FAHD2BQ6P2I3 314 aaPredicted RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 MRGPRGQ86SM5 289 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 BCL2L10Q9HD36 194 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 DNAJB12Q9NXW2 375 aaKnown RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 OR5AC2Q9NZP5 309 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 NEU3Q9UQ49 428 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 CFDP00746 253 aaPredicted RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 HIST1H1EP10412 219 aaKnown RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 GABRG2P18507 467 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 FHITP49789 147 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 KHDC3LQ587J8 217 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 C9orf50Q5SZB4 431 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 PUSL1Q8N0Z8 303 aaKnown RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 OR13G1Q8NGZ3 307 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 DHRS3O75911 302 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 LINC00518Q8N0U6 118 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.93□□□□□ -1.3
CIITA-201ENST00000324288 ZNF770Q6IQ21 691 aaPredicted RBP6.93□□□□□ -1.3
CIITA-201ENST00000324288 PLA2G2FQ9BZM2 168 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 TMEM210A6NLX4 147 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 LMO7DNF2Z398 122 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 M0R296 226 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 CTSVO60911 334 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 OVCH2Q7RTZ1 564 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 SNRNP40Q96DI7 357 aaKnown RBP6.93□□□□□ -1.3
CIITA-201ENST00000324288 ADTRPQ96IZ2 230 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 GSN-AS1Q9NRJ2 163 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 C7orf71A4D174 169 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 GNG7O60262 68 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 SLC25A42Q86VD7 318 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 C14orf144Q96I85 54 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 RAB1BQ9H0U4 201 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 A0A1B0GV72 72 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 PWWP2BQ6NUJ5 590 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 SPSB1Q96BD6 273 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 HSPB2A8KAH6 182 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 PLPP2O43688 288 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 CXorf1O96002 111 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 PSG6Q00889 435 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 EIF3IQ13347 325 aaKnown RBP6.93□□□□□ -1.3
CIITA-201ENST00000324288 HSPB2Q16082 182 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 OR10S1Q8NGN2 331 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 NT5CQ8TCD5 201 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 TRAV17A0A0B4J275 112 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 H3BTX0 84 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 CYB5R3P00387 301 aaPredicted RBP6.93□□□□□ -1.3
CIITA-201ENST00000324288 IGHV4-34P06331 123 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 HOXA6P31267 233 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 CCR5P51681 352 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 TMEM196Q5HYL7 178 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 OR1L1Q8NH94 360 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 RND1Q92730 232 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 R3HDM4Q96D70 268 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 RASL11BQ9BPW5 248 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 HILPDAQ9Y5L2 63 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 CTXND1A0A1B0GTU2 59 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 NDUFB4O95168 129 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 GP1BAP07359 652 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 PNRC1Q12796 327 aaPredicted RBP6.93□□□□□ -1.3
CIITA-201ENST00000324288 TMEM95Q3KNT9 176 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 MRPL30Q8TCC3 161 aaKnown RBP6.93□□□□□ -1.3
CIITA-201ENST00000324288 GGACTQ9BVM4 153 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 AMMECR1Q9Y4X0 333 aaPredicted RBP6.93□□□□□ -1.3
CIITA-201ENST00000324288 PRSS23O95084 383 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 CD3EP07766 207 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 C10orf126Q8N4M7 172 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 PP6455Q8WZ26 134 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 SGK494Q96LW2 274 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 ACER2Q5QJU3 275 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 AMMECR1LQ6DCA0 310 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 NEU1Q99519 415 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 IL36RNQ9UBH0 155 aa6.93□□□□□ -1.3
CIITA-201ENST00000324288 LINC00587B1AMM8 73 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 CDC42EP2O14613 210 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 EDIL3O43854 480 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 JMJD6Q6NYC1 403 aaPredicted RBP6.92□□□□□ -1.3
CIITA-201ENST00000324288 REC114Q7Z4M0 266 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 MBD3L1Q8WWY6 194 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 EPPINO95925 133 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 FGF9P31371 208 aaPredicted RBP6.92□□□□□ -1.3
CIITA-201ENST00000324288 SLC52A3Q9NQ40 469 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 DENND4AQ7Z401 1863 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 MRPS11P82912 194 aaKnown RBP6.92□□□□□ -1.3
CIITA-201ENST00000324288 EWSR1Q01844 656 aaKnown RBP eCLIP6.92□□□□□ -1.3
CIITA-201ENST00000324288 FAM53BQ14153 422 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 OR8B12Q8NGG6 310 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 OR4D11Q8NGI4 311 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 GUCD1Q96NT3 240 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 TMEM38BQ9NVV0 291 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 IFITM3Q01628 133 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 OR4S2Q8NH73 311 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 CITED2Q99967 270 aaPredicted RBP6.92□□□□□ -1.3
CIITA-201ENST00000324288 LNP1A1A4G5 178 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 FFAR1O14842 300 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 PITX3O75364 302 aa6.92□□□□□ -1.3
CIITA-201ENST00000324288 PMELP40967 661 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms