RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 NALCNQ8IZF0 1738 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 D6R8Y8 96 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 SPRY3O43610 288 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 NDUFS6O75380 124 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 GCM2O75603 506 aaPredicted RBP6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 PCMT1P22061 227 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 LPAL2Q16609 132 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 MUSTN1Q8IVN3 82 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 IGSF8Q969P0 613 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 OR2H1Q9GZK4 316 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 TMEM131LA2VDJ0 1609 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 PGPA6NDG6 321 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 BMP2P12643 396 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 DCTP40126 519 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 RTL10Q7L3V2 364 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 MRPL30Q8TCC3 161 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 PELI1Q96FA3 418 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 PRR13Q9NZ81 148 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 LAMTOR2Q9Y2Q5 125 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 AKAP12Q02952 1782 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 A8MWP6 167 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 KIR2DS3K7RE56 304 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 CXCL11O14625 94 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 NDUFB3O43676 98 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 MRPS14O60783 128 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 ICAM1P05362 532 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 CD3EP07766 207 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 KIR2DS3Q14952 304 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 PAPPA-AS1Q5QFB9 102 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 ACER2Q5QJU3 275 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 GTSCR1Q86UQ5 136 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 HOGA1Q86XE5 327 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 IGHV1OR21-1A0A087WYE8 117 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 A0A0U1RQV5 110 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 A0A1W2PNR3 127 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 IGLON5A6NGN9 336 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 SFT2D2O95562 160 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 ADAMTSL5Q6ZMM2 481 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 H1FNTQ75WM6 255 aaPredicted RBP6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 SRSF12Q8WXF0 261 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 FGF13Q92913 245 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 ZDHHC18Q9NUE0 388 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 WSB2Q9NYS7 404 aaPredicted RBP6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 J3KT08 172 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 IGHG2P01859 326 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 CTSCP53634 463 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 CDCP2Q5VXM1 449 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 KLHDC8AQ8IYD2 350 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 CBARPQ8N350 705 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 TTC9BQ8N6N2 239 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 KREMEN2Q8NCW0 462 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 ZNRF2Q8NHG8 242 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 IRF7Q92985 503 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 IGSF5Q9NSI5 407 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 CD52P31358 61 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 FBXO27Q8NI29 283 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 APIPQ96GX9 242 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 PEAK1Q9H792 1746 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 A0A096LPE4 126 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 A0A1W2PPZ6 126 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 F2RL2O00254 374 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 ZNF138P52744 262 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 MPV17L2Q567V2 206 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 SH2D5Q6ZV89 423 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 SPRED2Q7Z698 418 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 DNAJC30Q96LL9 226 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 TNFRSF13CQ96RJ3 184 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 INSM2Q96T92 566 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 SLC25A39Q9BZJ4 359 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 RNF208Q9H0X6 261 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 SOCS3O14543 225 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 KCNMB1Q16558 191 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 TAL2Q16559 108 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 WIPI1Q5MNZ9 446 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 SPNS2Q8IVW8 549 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 OR52I1Q8NGK6 324 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 MRGPRX1Q96LB2 322 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 NRIP2Q9BQI9 281 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 TXNRD2Q9NNW7 524 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 IDI2-AS1Q9NZ38 188 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 RBPJLQ9UBG7 517 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 C4AP0C0L4 1744 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 C4BP0C0L5 1744 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 USP31Q70CQ4 1352 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 TRBV4-1A0A0J9YWV2 114 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 GASTP01350 101 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 APOHP02749 345 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 FOXA3P55318 350 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 POLR2GP62487 172 aaKnown RBP eCLIP6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 DCAF12L1Q5VU92 463 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 PRSS54Q6PEW0 395 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 CNRIP1Q96F85 164 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 RNF115Q9Y4L5 304 aa6.69□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM90A7PA6NKC0 464 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM90A22PA8MWA6 464 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM90A12PA8MX19 464 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM90A23PA8MXZ1 464 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 KLRC4O43908 158 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 CXCL10P02778 98 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms