RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 PLEKHJ1Q9NW61 149 aa12.91□□□□□ -0.34
LSM1-201ENST00000311351 V9GY05 133 aa12.91□□□□□ -0.34
LSM1-201ENST00000311351 TCRBV4S1A1TA0A5B7 111 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 PSMB11A5LHX3 300 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 NCBP2LA6PVI3 153 aaKnown RBP12.9□□□□□ -0.34
LSM1-201ENST00000311351 TXNL1O43396 289 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 CD1BP29016 333 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 VEGFCP49767 419 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 HTD2P86397 168 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 CD200R1LQ6Q8B3 271 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 MOB1BQ7L9L4 216 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 ZNF329Q86UD4 541 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 ODF3L1Q8IXM7 274 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 FAM89BQ8N5H3 189 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 GALMQ96C23 342 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 ARHGAP5-AS1Q96IT6 56 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 MRPL20Q9BYC9 149 aaKnown RBP12.9□□□□□ -0.34
LSM1-201ENST00000311351 PARP12Q9H0J9 701 aaKnown RBP12.9□□□□□ -0.34
LSM1-201ENST00000311351 ABRACLQ9P1F3 81 aa12.9□□□□□ -0.34
LSM1-201ENST00000311351 TMEM272A0A1B0GTI8 110 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 LINC01548A6NM66 108 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 SERPINE3A8MV23 424 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 LDLRAD4O15165 306 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 LANCL1O43813 399 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 YPEL1O60688 119 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 MOSP00540 346 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 PSMB9P28065 219 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 OR3A3P47888 321 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 TMEM50BP56557 158 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 LSAMPQ13449 338 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 C2orf76Q3KRA6 126 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 SAMD5Q5TGI4 173 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 SLC35E3Q7Z769 313 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 SPARTQ8N0X7 666 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 Q8N9W7 124 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 FCGR1BQ92637 280 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 YPEL2Q96QA6 119 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 STEAP1Q9UHE8 339 aa12.89□□□□□ -0.35
LSM1-201ENST00000311351 TSSC4Q9Y5U2 329 aaPredicted RBP12.89□□□□□ -0.35
LSM1-201ENST00000311351 SAA2-SAA4A0A096LPE2 208 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 A0A0B4J203 849 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 SMIM30A4D0T7 59 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 ST8SIA5O15466 376 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 IGHG2P01859 326 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 SAA2P0DJI9 122 aaPredicted RBP12.88□□□□□ -0.35
LSM1-201ENST00000311351 PF4V1P10720 104 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 MYL9P24844 172 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 RANBP1P43487 201 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 HLA-DRB3P79483 266 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 BEAN1Q3B7T3 259 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 PLAC9Q5JTB6 97 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 UBE2UQ5VVX9 321 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 STEAP3Q658P3 488 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 C22orf42Q6IC83 251 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 OR2AK2Q8NG84 335 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 PECRQ9BY49 303 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 IFI27L2Q9H2X8 130 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 C12orf4Q9NQ89 552 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 PLSCR3Q9NRY6 295 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 OR1A1Q9P1Q5 309 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 LRRC42Q9Y546 428 aa12.88□□□□□ -0.35
LSM1-201ENST00000311351 TRBV6-6A0A0A6YYG2 114 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 TRAV1-2A0A0B4J238 106 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 TRDV1A0A1B0GX56 115 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 PDCD5O14737 125 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 RGS11O94810 467 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 GPR12P47775 334 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 F2RL1P55085 397 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 MOGAT2Q3SYC2 334 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 ZNF833PQ6ZTB9 187 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 NR2C2APQ86WQ0 139 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 OR56B1Q8NGI3 324 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 S1PR3Q99500 378 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 NABP2Q9BQ15 211 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 ABCG5Q9H222 651 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 LIN7CQ9NUP9 197 aaKnown RBP12.87□□□□□ -0.35
LSM1-201ENST00000311351 SLC23A1Q9UHI7 598 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 HSF4Q9ULV5 492 aa12.87□□□□□ -0.35
LSM1-201ENST00000311351 IFITM5A6NNB3 132 aa12.86□□□□□ -0.35
LSM1-201ENST00000311351 RAB3BP20337 219 aa12.86□□□□□ -0.35
LSM1-201ENST00000311351 PSMD7P51665 324 aa12.86□□□□□ -0.35
LSM1-201ENST00000311351 OXLD1Q5BKU9 147 aa12.86□□□□□ -0.35
LSM1-201ENST00000311351 LY6G6FQ5SQ64 297 aa12.86□□□□□ -0.35
LSM1-201ENST00000311351 FOXRED2Q8IWF2 684 aa12.86□□□□□ -0.35
LSM1-201ENST00000311351 STPG2Q8N412 459 aa12.86□□□□□ -0.35
LSM1-201ENST00000311351 FAM71E2Q8N5Q1 922 aa12.86□□□□□ -0.35
LSM1-201ENST00000311351 CHPT1Q8WUD6 406 aa12.86□□□□□ -0.35
LSM1-201ENST00000311351 CMSS1Q9BQ75 279 aaKnown RBP12.86□□□□□ -0.35
LSM1-201ENST00000311351 HSPB9Q9BQS6 159 aa12.86□□□□□ -0.35
LSM1-201ENST00000311351 RIMS4Q9H426 269 aaPredicted RBP12.86□□□□□ -0.35
LSM1-201ENST00000311351 Q9N2K0 584 aa12.86□□□□□ -0.35
LSM1-201ENST00000311351 PF4P02776 101 aa12.85□□□□□ -0.35
LSM1-201ENST00000311351 PRB2P02812 416 aaPredicted RBP12.85□□□□□ -0.35
LSM1-201ENST00000311351 SCTP09683 121 aa12.85□□□□□ -0.35
LSM1-201ENST00000311351 SLC2A2P11168 524 aaPredicted RBP12.85□□□□□ -0.35
LSM1-201ENST00000311351 CNTFRP26992 372 aa12.85□□□□□ -0.35
LSM1-201ENST00000311351 MMDQ15546 238 aa12.85□□□□□ -0.35
LSM1-201ENST00000311351 KCTD21Q4G0X4 260 aa12.85□□□□□ -0.35
LSM1-201ENST00000311351 RPL39P5Q59GN2 51 aa12.85□□□□□ -0.35
LSM1-201ENST00000311351 C18orf65Q6ZTR6 163 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms