RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 DBX1A6NMT0 343 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 OR8B8Q15620 311 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 OR1L6Q8NGR2 347 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 FAM117AQ9C073 453 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 FAM206AQ9NX38 181 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 POLEQ07864 2286 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 LRRK1Q38SD2 2015 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 BMPR1BO00238 502 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 ATP6V1FQ16864 119 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 ZNF385AQ96PM9 386 aaKnown RBP13.29□□□□□ -0.28
SHH-201ENST00000297261 ANGPTL4Q9BY76 406 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 TMEM222Q9H0R3 208 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 A0A1W2PPE3 182 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 NDUFB4O95168 129 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 SERF2P84101 59 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 HIST3H3Q16695 136 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 BTNL3Q6UXE8 466 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 TMEM105Q8N8V8 129 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 KCNE4Q8WWG9 221 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 COMMD5Q9GZQ3 224 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 WNK2Q9Y3S1 2297 aa13.29□□□□□ -0.28
SHH-201ENST00000297261 TNFSF4P23510 183 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 OR1C1Q15619 314 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 SPNS3Q6ZMD2 512 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 KCNK17Q96T54 332 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 MESP1Q9BRJ9 268 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 RPRMQ9NS64 109 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 SH3BGRL2Q9UJC5 107 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 FANCMQ8IYD8 2048 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 SERTM2A0A1B0GWG4 89 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 B4E171 279 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 NDUFB7P17568 137 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 BCL3P20749 454 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 TSPAN7P41732 249 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 C1QL2Q7Z5L3 287 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 OR2M3Q8NG83 312 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 KLF13Q9Y2Y9 288 aaPredicted RBP13.28□□□□□ -0.28
SHH-201ENST00000297261 AUP1Q9Y679 476 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 A0A1B0GU03 582 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 TMEM30CPA0ZSE6 113 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 ZNHIT1O43257 154 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 SCTP09683 121 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 RSPO4Q2I0M5 234 aaPredicted RBP13.28□□□□□ -0.28
SHH-201ENST00000297261 HIKESHIQ53FT3 197 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 RBKSQ9H477 322 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 HS3ST3B1Q9Y662 390 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 LHFPL6Q9Y693 200 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 CACNA1GO43497 2377 aa13.28□□□□□ -0.28
SHH-201ENST00000297261 BRCA2P51587 3418 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 GRIFINA4D1Z8 144 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 M0R2Z0 102 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 GALR2O43603 387 aaPredicted RBP13.27□□□□□ -0.28
SHH-201ENST00000297261 F2RP25116 425 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 HINT1P49773 126 aaPredicted RBP13.27□□□□□ -0.28
SHH-201ENST00000297261 SPINK14Q6IE38 97 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 ZNF519Q8TB69 540 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 TP53RKQ96S44 253 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 HIF1ANQ9NWT6 349 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 CLN8Q9UBY8 286 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 OR2W1Q9Y3N9 320 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 RHOBP62745 196 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 ELOBQ15370 118 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 Q56UQ5 140 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 FAM162BQ5T6X4 162 aa13.27□□□□□ -0.28
SHH-201ENST00000297261 WDR61Q9GZS3 305 aaKnown RBP13.27□□□□□ -0.28
SHH-201ENST00000297261 LNP1A1A4G5 178 aa13.27□□□□□ -0.29
SHH-201ENST00000297261 F8VVB4 439 aa13.27□□□□□ -0.29
SHH-201ENST00000297261 F8VWA3 439 aa13.27□□□□□ -0.29
SHH-201ENST00000297261 SOD3P08294 240 aa13.27□□□□□ -0.29
SHH-201ENST00000297261 TUBA4BQ9H853 241 aa13.27□□□□□ -0.29
SHH-201ENST00000297261 ZNF735P0CB33 412 aa13.27□□□□□ -0.29
SHH-201ENST00000297261 MRGPRDQ8TDS7 321 aa13.27□□□□□ -0.29
SHH-201ENST00000297261 H1FXQ92522 213 aaKnown RBP13.27□□□□□ -0.29
SHH-201ENST00000297261 OR4C12Q96R67 309 aa13.27□□□□□ -0.29
SHH-201ENST00000297261 RTBDNQ9BSG5 229 aaPredicted RBP13.27□□□□□ -0.29
SHH-201ENST00000297261 RIF1Q5UIP0 2472 aaKnown RBP13.26□□□□□ -0.29
SHH-201ENST00000297261 IGHV1-45A0A0A0MS14 117 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 MS4A18H0YCH9 400 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 EGR1P18146 543 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 G6PCP35575 357 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 MS4A18Q3C1V0 323 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 DMRTA1Q5VZB9 504 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 TMEM183AQ8IXX5 376 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 ABHD14AQ9BUJ0 271 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 ABCA1O95477 2261 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 CSN3P07498 182 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 MELTFP08582 738 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 SRP19P09132 144 aaKnown RBP13.26□□□□□ -0.29
SHH-201ENST00000297261 CD82P27701 267 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 PLPPR5Q32ZL2 321 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 GFI1BQ5VTD9 330 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 WDR73Q6P4I2 378 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 HIST1H2BKO60814 126 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 HIST1H2BJP06899 126 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 HIST1H2BOP23527 126 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 HIST1H2BBP33778 126 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 HIST1H2BDP58876 126 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 HIST1H2BCP62807 126 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 RAC1P63000 192 aa13.26□□□□□ -0.29
SHH-201ENST00000297261 TMEM187Q14656 261 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms