RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 RAE1P78406 368 aaKnown RBP8.18□□□□□ -1.1
CUX1-201ENST00000292535 SPOCK3Q9BQ16 436 aa8.18□□□□□ -1.1
CUX1-201ENST00000292535 NCKAP5O14513 1909 aa8.18□□□□□ -1.1
CUX1-201ENST00000292535 CDIPTO14735 213 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 STAG3L3P0CL85 134 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 IFITM10A6NMD0 228 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 ST3GAL2Q16842 350 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 HCFC1P51610 2035 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 CCL2P13500 99 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 ZG16BQ96DA0 208 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 ABHD3Q8WU67 409 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 TEX30Q5JUR7 227 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 GAPTQ8N292 157 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 WDR81Q562E7 1941 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 ZNF324O75467 553 aaPredicted RBP8.17□□□□□ -1.1
CUX1-201ENST00000292535 RSG1Q9BU20 258 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 LGALS3P17931 250 aaKnown RBP8.17□□□□□ -1.1
CUX1-201ENST00000292535 IER3P46695 156 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 GAB4Q2WGN9 574 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 FAM106AQ4KMX7 169 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 LRRC3BQ96PB8 259 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 PHLDA3Q9Y5J5 127 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 TMEM33P57088 247 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 ADAT3Q96EY9 351 aaPredicted RBP8.17□□□□□ -1.1
CUX1-201ENST00000292535 FXYD1O00168 92 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 EML2O95834 649 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 SNRPEP62304 92 aaKnown RBP8.17□□□□□ -1.1
CUX1-201ENST00000292535 LAMTOR1Q6IAA8 161 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 WFDC3Q8IUB2 231 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 GVQW1Q8N7I0 195 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 MARS2Q96GW9 593 aaKnown RBP8.17□□□□□ -1.1
CUX1-201ENST00000292535 PRO1933Q9H354 126 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 CTXND1A0A1B0GTU2 59 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 MAS1LP35410 378 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 Q6ZS52 159 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 WDR54Q9H977 334 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 PARP11Q9NR21 331 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 NEU3Q9UQ49 428 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 NUDT3O95989 172 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 MT-ND6P03923 174 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 POLR2GP62487 172 aaKnown RBP eCLIP8.17□□□□□ -1.1
CUX1-201ENST00000292535 ALKBH7Q9BT30 221 aaPredicted RBP8.17□□□□□ -1.1
CUX1-201ENST00000292535 TRPM7Q96QT4 1865 aa8.17□□□□□ -1.1
CUX1-201ENST00000292535 RBBP6Q7Z6E9 1792 aaKnown RBP8.16□□□□□ -1.1
CUX1-201ENST00000292535 TRAV20A0A0B4J274 112 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 HPRT1P00492 218 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 FAM157CP0CG43 387 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 PWWP2BQ6NUJ5 590 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 ATG4DQ86TL0 474 aaPredicted RBP8.16□□□□□ -1.1
CUX1-201ENST00000292535 DDB2Q92466 427 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 WDR34Q96EX3 536 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 CHST1O43916 411 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 MAGEA5P43359 124 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 RPL29P47914 159 aaKnown RBP8.16□□□□□ -1.1
CUX1-201ENST00000292535 KIR2DL4Q99706 377 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 PRSS2P07478 247 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 MMP9P14780 707 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 CKS2P33552 79 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 TMEM50BP56557 158 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 DYRK2Q92630 601 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 GUCA2BQ16661 112 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 SMUG1Q53HV7 270 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 TNFRSF12AQ9NP84 129 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 H3BQ15 152 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 LDLRAD3Q86YD5 345 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 OR52M1Q8NGK5 317 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 TINAGQ9UJW2 476 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 NDUFA2O43678 99 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 SCNM1Q9BWG6 230 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 ZNF430Q9H8G1 570 aaPredicted RBP8.16□□□□□ -1.1
CUX1-201ENST00000292535 RGPD3A6NKT7 1758 aaPredicted RBP8.16□□□□□ -1.1
CUX1-201ENST00000292535 SCN7AQ01118 1682 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 CA2P00918 260 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 KLF9Q13886 244 aaPredicted RBP8.16□□□□□ -1.1
CUX1-201ENST00000292535 CXorf66Q5JRM2 361 aaPredicted RBP8.16□□□□□ -1.1
CUX1-201ENST00000292535 WDFY1Q8IWB7 410 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 OR4C46A6NHA9 309 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 PPYP01298 95 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 H0Y980 276 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 ORAI1Q96D31 301 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 SNX22Q96L94 193 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 TBX15Q96SF7 602 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 LOC389332A0A1B0GUA5 103 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 CDX1P47902 265 aaPredicted RBP8.16□□□□□ -1.1
CUX1-201ENST00000292535 PAPPA-AS1Q5QFB9 102 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 FGF11Q92914 225 aa8.16□□□□□ -1.1
CUX1-201ENST00000292535 GGTLC2Q14390 218 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 C9orf50Q5SZB4 431 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 DMKNQ6E0U4 476 aaPredicted RBP8.15□□□□□ -1.1
CUX1-201ENST00000292535 SMIM6P0DI80 62 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 HMGA2P52926 109 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 NEURL2Q9BR09 285 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 MRPL13Q9BYD1 178 aaKnown RBP8.15□□□□□ -1.1
CUX1-201ENST00000292535 GPR61Q9BZJ8 451 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 ZNF646O15015 1829 aaPredicted RBP8.15□□□□□ -1.1
CUX1-201ENST00000292535 SNURFLB1AK76 121 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 B4E171 279 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 TSPAN7P41732 249 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 SELENOPP49908 381 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 SUCLG1P53597 346 aaKnown RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms