RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SYT11Q9BT88 431 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 MMP25Q9NPA2 562 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 CFAP161Q6P656 301 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 MAST2Q6P0Q8 1798 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 FFAR1O14842 300 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 IGHV3-13P01766 116 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 IGHV3-7P01780 117 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 DDA1Q9BW61 102 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 PDCD1Q15116 288 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 TMEM179BQ7Z7N9 219 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 WIPI2Q9Y4P8 454 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 FCMRO60667 390 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 GPX1P07203 203 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 FOXC1Q12948 553 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 GAPTQ8N292 157 aa12.24□□□□□ -0.45
CCDC88A-201ENST00000263630 ZNF646O15015 1829 aaPredicted RBP12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 IGLV3-10A0A075B6K4 115 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 DDTP30046 118 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 MMP16P51512 607 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 MESTQ5EB52 335 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 ANKRD34AQ69YU3 496 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 NIT1Q86X76 327 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 CBLN2Q8IUK8 224 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 C10orf111Q8N326 155 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 OR1K1Q8NGR3 316 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 NUBPLQ8TB37 319 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 PGLYRP4Q96LB8 373 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 CXorf65A6NEN9 183 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 GDF9O60383 454 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 WIPI1Q5MNZ9 446 aaPredicted RBP12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 ZNF414Q96IQ9 312 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 DMRTA2Q96SC8 542 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 ERGP11308 486 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 TRAV8-2A0A0B4J237 113 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 FAM159AQ6UWV7 190 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 SLC25A10Q9UBX3 287 aaPredicted RBP12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 CCL27Q9Y4X3 112 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 ZFPL1O95159 310 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 INTS1Q8N201 2190 aaKnown RBP12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 C4AP0C0L4 1744 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 C4BP0C0L5 1744 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 TNFRSF18Q9Y5U5 241 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 LMO7DNF2Z398 122 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 ASIPP42127 132 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 TMEM177Q53S58 311 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 FGF22Q9HCT0 170 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 A0A0B4J2E0 115 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 A0A1B0GX12 115 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 TMEM202A6NGA9 273 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 DMRTC1Q5HYR2 192 aa12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 PHF7Q9BWX1 381 aaPredicted RBP12.23□□□□□ -0.45
CCDC88A-201ENST00000263630 ATP5LO75964 103 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 PF4V1P10720 104 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 MPLP40238 635 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 ARRDC1-AS1Q9H2J1 176 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 TMEM160Q9NX00 188 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 A0A0A6YYD5 115 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 PRR35P0CG20 571 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 APELAP0DMC3 54 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 SMAD4Q13485 552 aaKnown RBP12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 TMEM171Q8WVE6 324 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 DUX5Q96PT3 197 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 C6orf106Q9H6K1 298 aaPredicted RBP12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 SPCS1Q9Y6A9 102 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 RGPD2P0DJD1 1756 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 TMEM50AO95807 157 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 LSM6P62312 80 aaKnown RBP12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 TUBGCP6Q96RT7 1819 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 HPRT1P00492 218 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 TMEM50BP56557 158 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 SSBP4Q9BWG4 385 aaPredicted RBP12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 TNFSF18Q9UNG2 199 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 PXMP4Q9Y6I8 212 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 SRFP11831 508 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 TMEM249Q2WGJ8 235 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 RFLNAQ6ZTI6 216 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 TP53I13Q8NBR0 393 aaPredicted RBP12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 MBNL2Q5VZF2 373 aaKnown RBP12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 SIGLEC7Q9Y286 467 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 PRF1P14222 555 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 RIMKLAQ8IXN7 391 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 LINC00615Q96LM1 132 aaPredicted RBP12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 TSPAN2O60636 221 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 ASAH2BP0C7U1 165 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 CCL7P80098 99 aa12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 SRSF6Q13247 344 aaKnown RBP12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 PTPMT1Q8WUK0 201 aaPredicted RBP12.22□□□□□ -0.45
CCDC88A-201ENST00000263630 UNQ9370/PRO34162Q6UXP9 181 aa12.21□□□□□ -0.45
CCDC88A-201ENST00000263630 OR5AN1Q8NGI8 311 aa12.21□□□□□ -0.45
CCDC88A-201ENST00000263630 TUBD1Q9UJT1 453 aa12.21□□□□□ -0.45
CCDC88A-201ENST00000263630 HOXA5P20719 270 aa12.21□□□□□ -0.45
CCDC88A-201ENST00000263630 CRYBB2P43320 205 aa12.21□□□□□ -0.45
CCDC88A-201ENST00000263630 PDLIM7Q9NR12 457 aa12.21□□□□□ -0.45
CCDC88A-201ENST00000263630 ZNF117Q03924 483 aa12.21□□□□□ -0.45
CCDC88A-201ENST00000263630 C19orf24Q9BVV8 132 aa12.21□□□□□ -0.45
CCDC88A-201ENST00000263630 SF3B6Q9Y3B4 125 aaKnown RBP12.21□□□□□ -0.45
CCDC88A-201ENST00000263630 DOCK6Q96HP0 2047 aa12.21□□□□□ -0.45
CCDC88A-201ENST00000263630 SMCHD1A6NHR9 2005 aa12.21□□□□□ -0.45
CCDC88A-201ENST00000263630 TCRBV5S2A0A599 114 aa12.21□□□□□ -0.46
CCDC88A-201ENST00000263630 PQLC2Q6ZP29 291 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms