RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PPP1CCP36873 323 aaKnown RBP16.62■□□□□ 0.25
UPF1-201ENST00000262803 RNF151Q2KHN1 245 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 HLA-DRB5Q30154 266 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 LBHQ53QV2 105 aaPredicted RBP16.62■□□□□ 0.25
UPF1-201ENST00000262803 FAM181AQ8N9Y4 354 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 AP5S1Q9NUS5 200 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 DCAF16Q9NXF7 216 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 DSPPQ9NZW4 1301 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 TRAV20A0A0B4J274 112 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 M0R2Z0 102 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 SERF2P84101 59 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 EWSR1Q01844 656 aaKnown RBP eCLIP16.62■□□□□ 0.25
UPF1-201ENST00000262803 TSPAN2O60636 221 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 RIPPLY2Q5TAB7 128 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 GBGT1Q8N5D6 347 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 METTL26Q96S19 204 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 KLK13Q9UKR3 277 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 APC2O95996 2303 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 LY75O60449 1722 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 MELTFP08582 738 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 OR10J6PQ8NGY7 276 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 PILRAQ9UKJ1 303 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 ZNF638Q14966 1978 aaKnown RBP16.61■□□□□ 0.25
UPF1-201ENST00000262803 PATE3B3GLJ2 98 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 HLA-DQB1P01920 261 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 DLX1P56177 255 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 CLDN18P56856 261 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 ZNF345Q14585 488 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 CEBPEQ15744 281 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 PCSK4Q6UW60 755 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 LRP11Q86VZ4 500 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 ZNF385AQ96PM9 386 aaKnown RBP16.61■□□□□ 0.25
UPF1-201ENST00000262803 RSRP1Q9BUV0 290 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 OR2J1Q9GZK6 312 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 PARP11Q9NR21 331 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 TNFRSF19Q9NS68 423 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 PILRBQ9UKJ0 227 aa16.61■□□□□ 0.25
UPF1-201ENST00000262803 A0A0J9YW62 118 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 ZNF735P0CB33 412 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 ATP5IP56385 69 aaPredicted RBP16.6■□□□□ 0.25
UPF1-201ENST00000262803 RELBQ01201 579 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 GAMTQ14353 236 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 OR2V2Q96R30 315 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 NPVFQ9HCQ7 196 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 NKX2-6A6NCS4 301 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 NPIPB6E9PJ23 425 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 SRSF10O75494 262 aaKnown RBP16.6■□□□□ 0.25
UPF1-201ENST00000262803 FOXL2P58012 376 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 VAX1Q5SQQ9 334 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 PCGF1Q9BSM1 259 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 MRPL37Q9BZE1 423 aaKnown RBP16.6■□□□□ 0.25
UPF1-201ENST00000262803 ELF5Q9UKW6 265 aaPredicted RBP16.6■□□□□ 0.25
UPF1-201ENST00000262803 CBY1Q9Y3M2 126 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 H0Y980 276 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 HBZP02008 142 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 CAMPP49913 170 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 TNFSF18Q9UNG2 199 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 ZNF883P0CG24 379 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 PDLIM4P50479 330 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 TMEM50BP56557 158 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 OR4C5Q8NGB2 326 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 DNASE2BQ8WZ79 361 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 BET1LQ9NYM9 111 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 RNF115Q9Y4L5 304 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 AP4M1O00189 453 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 CD81P60033 236 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 DYRK2Q92630 601 aa16.6■□□□□ 0.25
UPF1-201ENST00000262803 C7orf77A4D0Y5 90 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 VSIG10L2P0DP72 767 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 OR4A5Q8NH83 315 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 COPS9Q8WXC6 57 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 ZNF831Q5JPB2 1677 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 CIDEAO60543 219 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 RPS20P60866 119 aaKnown RBP16.59■□□□□ 0.25
UPF1-201ENST00000262803 MRGPRFQ96AM1 343 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 BMPR1BO00238 502 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 FAM157CP0CG43 387 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 KLRB1Q12918 225 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 TMEM78Q5T7P6 136 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 HDHD3Q9BSH5 251 aaPredicted RBP16.59■□□□□ 0.25
UPF1-201ENST00000262803 CHRNA10Q9GZZ6 450 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 SPTA1P02549 2419 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 CLDN14O95500 239 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 SP9P0CG40 484 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 ERVS71-1P61550 626 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 PMS2P11Q13670 270 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 MUC15Q8N387 334 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 PAXXQ9BUH6 204 aa16.59■□□□□ 0.25
UPF1-201ENST00000262803 COLQQ9Y215 455 aaPredicted RBP16.59■□□□□ 0.25
UPF1-201ENST00000262803 DLL1O00548 723 aa16.58■□□□□ 0.25
UPF1-201ENST00000262803 OR2A4O95047 310 aa16.58■□□□□ 0.25
UPF1-201ENST00000262803 ADRA2AP08913 450 aa16.58■□□□□ 0.25
UPF1-201ENST00000262803 MEOX2P50222 304 aa16.58■□□□□ 0.25
UPF1-201ENST00000262803 FHL5Q5TD97 284 aa16.58■□□□□ 0.25
UPF1-201ENST00000262803 VWA1Q6PCB0 445 aa16.58■□□□□ 0.25
UPF1-201ENST00000262803 SAP25Q8TEE9 199 aa16.58■□□□□ 0.25
UPF1-201ENST00000262803 OR2A7Q96R45 310 aa16.58■□□□□ 0.25
UPF1-201ENST00000262803 FAM90A26D6RGX4 464 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 KLF7O75840 302 aaPredicted RBP16.58■□□□□ 0.24
UPF1-201ENST00000262803 CD200R1LQ6Q8B3 271 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms