RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PBDC1Q9BVG4 233 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 NMES1Q9C002 83 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 MIOXQ9UGB7 285 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 JPT1Q9UK76 154 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 FAM208BQ5VWN6 2430 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 TRAV24A0A0B4J272 114 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 CLEC18AA5D8T8 446 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 ZNF729A6NN14 1252 aaPredicted RBP9.78□□□□□ -0.84
VPS4A-201ENST00000254950 DAOP14920 347 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 MPZP25189 248 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 SUB1P53999 127 aaKnown RBP eCLIP9.78□□□□□ -0.84
VPS4A-201ENST00000254950 TMEM30BQ3MIR4 351 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 CLEC18CQ8NCF0 446 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 RAB40CQ96S21 281 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 OR1A1Q9P1Q5 309 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 FAM96BQ9Y3D0 163 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 HMSDA8MTL9 139 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 C12orf77C9JDV5 145 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 H3BP45 60 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 CRYZL1O95825 349 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 CGAP01215 116 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 THBS3P49746 956 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 AKR1C1Q04828 323 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 ASCL4Q6XD76 172 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 TGIF2LYQ8IUE0 185 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 TGIF2LXQ8IUE1 241 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 FAM216BQ8N7L0 139 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 MRPL30Q8TCC3 161 aaKnown RBP9.78□□□□□ -0.84
VPS4A-201ENST00000254950 CBLN4Q9NTU7 201 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 DUXBA0A1W2PPF3 345 aa9.77□□□□□ -0.84
VPS4A-201ENST00000254950 K7N7A8 449 aa9.77□□□□□ -0.84
VPS4A-201ENST00000254950 RAB29O14966 203 aa9.77□□□□□ -0.84
VPS4A-201ENST00000254950 MLNRO43193 412 aa9.77□□□□□ -0.84
VPS4A-201ENST00000254950 ZNF146Q15072 292 aa9.77□□□□□ -0.84
VPS4A-201ENST00000254950 NCMAPQ5T1S8 102 aa9.77□□□□□ -0.84
VPS4A-201ENST00000254950 Q8NA96 180 aa9.77□□□□□ -0.84
VPS4A-201ENST00000254950 OR10P1Q8NGE3 313 aa9.77□□□□□ -0.84
VPS4A-201ENST00000254950 SCARB1Q8WTV0 552 aa9.77□□□□□ -0.84
VPS4A-201ENST00000254950 EIF5A2Q9GZV4 153 aaKnown RBP9.77□□□□□ -0.84
VPS4A-201ENST00000254950 SHARPINQ9H0F6 387 aa9.77□□□□□ -0.84
VPS4A-201ENST00000254950 IDI2-AS1Q9NZ38 188 aa9.77□□□□□ -0.84
VPS4A-201ENST00000254950 CRYM-AS1A6NIL9 109 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 F8VVB4 439 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 F8VWA3 439 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 PTBP3O95758 552 aaKnown RBP9.77□□□□□ -0.85
VPS4A-201ENST00000254950 MT-CO2P00403 227 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 NAT1P18440 290 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 BTCP35070 178 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 SSTR5P35346 364 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 BAXQ07812 192 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 COMMD7Q86VX2 200 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 PLPPR1Q8TBJ4 325 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 RNF141Q8WVD5 230 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 MRGPRFQ96AM1 343 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 NEIL1Q96FI4 390 aaPredicted RBP9.77□□□□□ -0.85
VPS4A-201ENST00000254950 ABHD14BQ96IU4 210 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 GSX2Q9BZM3 304 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 PLCE1Q9P212 2302 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 A0A1W2PPE3 182 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 ERHP84090 104 aaKnown RBP9.77□□□□□ -0.85
VPS4A-201ENST00000254950 DEFA5Q01523 94 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 GPR157Q5UAW9 335 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 MYPOPQ86VE0 399 aaPredicted RBP9.77□□□□□ -0.85
VPS4A-201ENST00000254950 R3HDM4Q96D70 268 aa9.77□□□□□ -0.85
VPS4A-201ENST00000254950 ANKHD1Q8IWZ3 2542 aaKnown RBP9.77□□□□□ -0.85
VPS4A-201ENST00000254950 MED19A0JLT2 244 aaPredicted RBP9.76□□□□□ -0.85
VPS4A-201ENST00000254950 H0Y980 276 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 BCL2L11O43521 198 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 SCAF4O95104 1147 aaKnown RBP9.76□□□□□ -0.85
VPS4A-201ENST00000254950 LY86O95711 162 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 RAB13P51153 203 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 ERVFRD-1P60508 538 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 ADIPOQQ15848 244 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 ZNF66Q6ZN08 573 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 BAP18Q8IXM2 172 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 TCTEX1D1Q8N7M0 179 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 OR13D1Q8NGV5 346 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 C17orf112F2Z3M2 114 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 TDGF1P3P51864 188 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 STUMQ69YW2 141 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 SEM1Q6ZVN7 128 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 NTNG2Q96CW9 530 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 A0A1W2PPV4 95 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 ZNF645Q8N7E2 425 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 CNTNAP3Q9BZ76 1288 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 TMEM222Q9H0R3 208 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 SSUH2Q9Y2M2 353 aa9.76□□□□□ -0.85
VPS4A-201ENST00000254950 PGLYRP1O75594 196 aaPredicted RBP9.75□□□□□ -0.85
VPS4A-201ENST00000254950 CST7O76096 145 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 NQO2P16083 231 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 ATP5J2P56134 94 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 POLR2GP62487 172 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS4A-201ENST00000254950 OR13A1Q8NGR1 328 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 RBMXL1Q96E39 390 aaKnown RBP9.75□□□□□ -0.85
VPS4A-201ENST00000254950 C1orf147Q96MC9 270 aaPredicted RBP9.75□□□□□ -0.85
VPS4A-201ENST00000254950 PLEKHA3Q9HB20 300 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 KCNIP2Q9NS61 270 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 RALYQ9UKM9 306 aaKnown RBP9.75□□□□□ -0.85
VPS4A-201ENST00000254950 A1L4Q6 167 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 AGPAT2O15120 278 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms