RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TVP23CQ96ET8 276 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 TCEAL7Q9BRU2 100 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 BCL2L14Q9BZR8 327 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 CDH20Q9HBT6 801 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 WIPI2Q9Y4P8 454 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 CDIPTO14735 213 aa13.88□□□□□ -0.19
HOXD3-201ENST00000249440 TNFSF15O95150 251 aa13.88□□□□□ -0.19
HOXD3-201ENST00000249440 IGKV1-5P01602 117 aa13.88□□□□□ -0.19
HOXD3-201ENST00000249440 IGHV2-5P01817 119 aa13.88□□□□□ -0.19
HOXD3-201ENST00000249440 PGA5P0DJD9 388 aa13.88□□□□□ -0.19
HOXD3-201ENST00000249440 UBE2NP61088 152 aaKnown RBP13.88□□□□□ -0.19
HOXD3-201ENST00000249440 ZNF585BQ52M93 769 aa13.88□□□□□ -0.19
HOXD3-201ENST00000249440 HEPN1Q6WQI6 88 aa13.88□□□□□ -0.19
HOXD3-201ENST00000249440 MUCL1Q96DR8 90 aa13.88□□□□□ -0.19
HOXD3-201ENST00000249440 YPEL4Q96NS1 127 aa13.88□□□□□ -0.19
HOXD3-201ENST00000249440 SPRR3Q9UBC9 169 aa13.88□□□□□ -0.19
HOXD3-201ENST00000249440 KIAA2026Q5HYC2 2103 aa13.88□□□□□ -0.19
HOXD3-201ENST00000249440 SPTBN2O15020 2390 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 FBP1P09467 338 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 IAPPP10997 89 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 HOXB1P14653 301 aaPredicted RBP13.87□□□□□ -0.19
HOXD3-201ENST00000249440 ARG2P78540 354 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 DLK1P80370 383 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 MYPOPQ86VE0 399 aaPredicted RBP13.87□□□□□ -0.19
HOXD3-201ENST00000249440 GMPPAQ96IJ6 420 aaPredicted RBP13.87□□□□□ -0.19
HOXD3-201ENST00000249440 PSMG3Q9BT73 122 aaPredicted RBP13.87□□□□□ -0.19
HOXD3-201ENST00000249440 TMEM9BQ9NQ34 198 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 OR14J1Q9UGF5 321 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 FRYQ5TBA9 3013 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 RNF212BA8MTL3 300 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 H0YL77 283 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 CELA3BP08861 270 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 METTL15P1P0C7V9 234 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 RAC2P15153 192 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 CTAG1AP78358 180 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 ZNF766Q5HY98 468 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 OR10G4Q8NGN3 311 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 LOXL4Q96JB6 756 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 RSG1Q9BU20 258 aa13.87□□□□□ -0.19
HOXD3-201ENST00000249440 ZNF806P0C7X5 589 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 IDH3GP51553 393 aaPredicted RBP13.86□□□□□ -0.19
HOXD3-201ENST00000249440 GABRA6Q16445 453 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 FIP1L1Q6UN15 594 aaKnown RBP13.86□□□□□ -0.19
HOXD3-201ENST00000249440 RBMS3Q6XE24 437 aaKnown RBP13.86□□□□□ -0.19
HOXD3-201ENST00000249440 SLC35E3Q7Z769 313 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 DRAM1Q8N682 238 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 TMEM178AQ8NBL3 297 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 UBALD1Q8TB05 177 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 RPRMQ9NS64 109 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 URB1O60287 2271 aaKnown RBP13.86□□□□□ -0.19
HOXD3-201ENST00000249440 LOC102723971A0A1B0GUV8 181 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 CXorf65A6NEN9 183 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 AP4M1O00189 453 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 OR8U8P0C7N1 319 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 SERF2P84101 59 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 RNFT1Q5M7Z0 435 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 DHRS13Q6UX07 377 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 LILRB2Q8N423 598 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 ZNF525Q8N782 197 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 SLC25A40Q8TBP6 338 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 SEBOXQ9HB31 216 aaPredicted RBP13.86□□□□□ -0.19
HOXD3-201ENST00000249440 SIRT7Q9NRC8 400 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 KCNIP1Q9NZI2 227 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 GNG13Q9P2W3 67 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 AKAP13Q12802 2813 aa13.86□□□□□ -0.19
HOXD3-201ENST00000249440 TMEM210A6NLX4 147 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 IQCF6A8MYZ5 107 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 FAM90A26D6RGX4 464 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 NQO2P16083 231 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 SELEP16581 610 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 ERVS71-1P61550 626 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 LRRC75BQ2VPJ9 315 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 FGFRL1Q8N441 504 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 TCTEX1D2Q8WW35 142 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 ZDHHC11Q9H8X9 412 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 ZNF727A8MUV8 499 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 GRPP07492 148 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 RPS10P46783 165 aaKnown RBP13.85□□□□□ -0.19
HOXD3-201ENST00000249440 B2MP61769 119 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 ARL16Q0P5N6 197 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 ZNF787Q6DD87 383 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 NANPQ8TBE9 248 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 MBD3L1Q8WWY6 194 aa13.85□□□□□ -0.19
HOXD3-201ENST00000249440 HAND1O96004 215 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 IGHV1-2P23083 117 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 PSG7Q13046 419 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 ALKBH6Q3KRA9 238 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 ACSF3Q4G176 576 aaPredicted RBP13.84□□□□□ -0.19
HOXD3-201ENST00000249440 SPANXN5Q5MJ07 72 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 HES3Q5TGS1 186 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 ZBTB34Q8NCN2 500 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 CISD1Q9NZ45 108 aaKnown RBP13.84□□□□□ -0.19
HOXD3-201ENST00000249440 MMP24Q9Y5R2 645 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 DIDO1Q9BTC0 2240 aaKnown RBP13.84□□□□□ -0.19
HOXD3-201ENST00000249440 B4DEV8 164 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 ELOBQ15370 118 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 SLC16A13Q7RTY0 426 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 ZNF645Q8N7E2 425 aa13.84□□□□□ -0.19
HOXD3-201ENST00000249440 PINX1Q96BK5 328 aaKnown RBP13.84□□□□□ -0.19
HOXD3-201ENST00000249440 GALMQ96C23 342 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms