RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ZNF497Q6ZNH5 498 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 ZNF439Q8NDP4 499 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 TRUB1Q8WWH5 349 aaKnown RBP11.6□□□□□ -0.55
SYNE2-228ENST00000639659 ORAI1Q96D31 301 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 RITA1Q96K30 269 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 MYCBPQ99417 103 aaPredicted RBP11.6□□□□□ -0.55
SYNE2-228ENST00000639659 MRPL20Q9BYC9 149 aaKnown RBP11.6□□□□□ -0.55
SYNE2-228ENST00000639659 RAB9BQ9NP90 201 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 CHCHD3Q9NX63 227 aaKnown RBP11.6□□□□□ -0.55
SYNE2-228ENST00000639659 ETAA1Q9NY74 926 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 KIAA1456Q9P272 454 aa11.6□□□□□ -0.55
SYNE2-228ENST00000639659 EXOGQ9Y2C4 368 aaKnown RBP11.6□□□□□ -0.55
SYNE2-228ENST00000639659 MCRIP1C9JLW8 97 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 NBR2O15453 112 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 LANCL1O43813 399 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 HLA-DRB1P01911 266 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 OR8U9P0C7N5 309 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 GTF2A1P52655 376 aaPredicted RBP11.59□□□□□ -0.55
SYNE2-228ENST00000639659 GNMTQ14749 295 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 PLGLAQ15195 96 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 C6orf183Q5T699 404 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 ACSM6Q6P461 480 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 LINC00596Q86U02 117 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 SGPP2Q8IWX5 399 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 SYS1Q8N2H4 156 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 RGP1Q92546 391 aaPredicted RBP11.59□□□□□ -0.55
SYNE2-228ENST00000639659 TM2D3Q9BRN9 247 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 CHCHD6Q9BRQ6 235 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 TOLLIPQ9H0E2 274 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 IFT22Q9H7X7 185 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 AMBNQ9NP70 447 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 OR2S2Q9NQN1 319 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 ZNF580Q9UK33 172 aa11.59□□□□□ -0.55
SYNE2-228ENST00000639659 MRPS28Q9Y2Q9 187 aaKnown RBP11.59□□□□□ -0.55
SYNE2-228ENST00000639659 MAGEA13PA6NCF6 341 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 LGALS1P09382 135 aaKnown RBP11.58□□□□□ -0.56
SYNE2-228ENST00000639659 GTF2F2P13984 249 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 VHLP40337 213 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 ZNF137PP52743 207 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 SNRPGP62308 76 aaKnown RBP11.58□□□□□ -0.56
SYNE2-228ENST00000639659 ADARB1P78563 741 aaKnown RBP11.58□□□□□ -0.56
SYNE2-228ENST00000639659 NDPQ00604 133 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 C5orf64Q2M2E5 130 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 Q3ZCU0 254 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 NHLRC3Q5JS37 347 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 LIN54Q6MZP7 749 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 ASCL4Q6XD76 172 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 OR52L2PQ8NGH6 319 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 GPR148Q8TDV2 347 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 TMEM106AQ96A25 262 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 CENPNQ96H22 339 aaPredicted RBP11.58□□□□□ -0.56
SYNE2-228ENST00000639659 MS4A10Q96PG2 267 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 ABHD14AQ9BUJ0 271 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 TMEM138Q9NPI0 162 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 PAK1IP1Q9NWT1 392 aaPredicted RBP11.58□□□□□ -0.56
SYNE2-228ENST00000639659 ERVK13-1Q9NX77 482 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 IL36GQ9NZH8 169 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 ERGIC3Q9Y282 383 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 LYSTQ99698 3801 aa11.58□□□□□ -0.56
SYNE2-228ENST00000639659 EI24O14681 340 aa11.57□□□□□ -0.56
SYNE2-228ENST00000639659 FADS2O95864 444 aaKnown RBP11.57□□□□□ -0.56
SYNE2-228ENST00000639659 ARSBP15848 533 aa11.57□□□□□ -0.56
SYNE2-228ENST00000639659 RCC1P18754 421 aaPredicted RBP11.57□□□□□ -0.56
SYNE2-228ENST00000639659 BDKRB2P30411 391 aa11.57□□□□□ -0.56
SYNE2-228ENST00000639659 PPP1CCP36873 323 aaKnown RBP11.57□□□□□ -0.56
SYNE2-228ENST00000639659 MRPL28Q13084 256 aaKnown RBP11.57□□□□□ -0.56
SYNE2-228ENST00000639659 LRRC36Q1X8D7 754 aa11.57□□□□□ -0.56
SYNE2-228ENST00000639659 RAB12Q6IQ22 244 aa11.57□□□□□ -0.56
SYNE2-228ENST00000639659 ZNF529Q6P280 563 aa11.57□□□□□ -0.56
SYNE2-228ENST00000639659 C5orf24Q7Z6I8 188 aa11.57□□□□□ -0.56
SYNE2-228ENST00000639659 ANKRD13BQ86YJ7 626 aa11.57□□□□□ -0.56
SYNE2-228ENST00000639659 ZNF184Q99676 751 aaPredicted RBP11.57□□□□□ -0.56
SYNE2-228ENST00000639659 CST11Q9H112 138 aa11.57□□□□□ -0.56
SYNE2-228ENST00000639659 EDA2RQ9HAV5 297 aa11.57□□□□□ -0.56
SYNE2-228ENST00000639659 FOXA2Q9Y261 457 aaPredicted RBP11.57□□□□□ -0.56
SYNE2-228ENST00000639659 FBXO7Q9Y3I1 522 aa11.57□□□□□ -0.56
SYNE2-228ENST00000639659 UBE2QL1A1L167 161 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 FAM90A10PA6NDY2 464 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 SOX15O60248 233 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 JTBO76095 146 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 OR3A3P47888 321 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 TPPP2P59282 170 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 MINDY2Q8NBR6 621 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 MRPS24Q96EL2 167 aaKnown RBP11.56□□□□□ -0.56
SYNE2-228ENST00000639659 CYYR1Q96J86 154 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 NABP2Q9BQ15 211 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 SPATA25Q9BR10 227 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 FAM103A1Q9BTL3 118 aaKnown RBP11.56□□□□□ -0.56
SYNE2-228ENST00000639659 ELOVL1Q9BW60 279 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 FBXL15Q9H469 300 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 TAF9BQ9HBM6 251 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 GMPPBQ9Y5P6 360 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 PEX16Q9Y5Y5 336 aa11.56□□□□□ -0.56
SYNE2-228ENST00000639659 ZNF780AO75290 641 aaPredicted RBP11.55□□□□□ -0.56
SYNE2-228ENST00000639659 RIPK1Q13546 671 aa11.55□□□□□ -0.56
SYNE2-228ENST00000639659 TMEM30BQ3MIR4 351 aa11.55□□□□□ -0.56
SYNE2-228ENST00000639659 MORN2Q502X0 79 aa11.55□□□□□ -0.56
SYNE2-228ENST00000639659 SLC25A30Q5SVS4 291 aa11.55□□□□□ -0.56
SYNE2-228ENST00000639659 XAF1Q6GPH4 301 aa11.55□□□□□ -0.56
SYNE2-228ENST00000639659 TRAT1Q6PIZ9 186 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 143.5 ms