RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 WBP4O75554 376 aaKnown RBP15.03■□□□□ -0
CLN3-262ENST00000637699 FADS2O95864 444 aaKnown RBP15.03■□□□□ -0
CLN3-262ENST00000637699 IGLV1-40P01703 118 aa15.03■□□□□ -0
CLN3-262ENST00000637699 GP9P14770 177 aa15.03■□□□□ -0
CLN3-262ENST00000637699 ZNF93P35789 620 aaPredicted RBP15.03■□□□□ -0
CLN3-262ENST00000637699 RAB9AP51151 201 aa15.03■□□□□ -0
CLN3-262ENST00000637699 GTF2A1P52655 376 aaPredicted RBP15.03■□□□□ -0
CLN3-262ENST00000637699 RAB40BQ12829 278 aa15.03■□□□□ -0
CLN3-262ENST00000637699 MRPL28Q13084 256 aaKnown RBP15.03■□□□□ -0
CLN3-262ENST00000637699 LSAMPQ13449 338 aa15.03■□□□□ -0
CLN3-262ENST00000637699 DOC2BQ14184 412 aa15.03■□□□□ -0
CLN3-262ENST00000637699 LRRC36Q1X8D7 754 aa15.03■□□□□ -0
CLN3-262ENST00000637699 MPV17LQ2QL34 196 aa15.03■□□□□ -0
CLN3-262ENST00000637699 SYT6Q5T7P8 510 aaPredicted RBP15.03■□□□□ -0
CLN3-262ENST00000637699 LINC00596Q86U02 117 aa15.03■□□□□ -0
CLN3-262ENST00000637699 STX19Q8N4C7 294 aa15.03■□□□□ -0
CLN3-262ENST00000637699 RGP1Q92546 391 aaPredicted RBP15.03■□□□□ -0
CLN3-262ENST00000637699 DLX4Q92988 240 aaPredicted RBP15.03■□□□□ -0
CLN3-262ENST00000637699 OR51J1Q9H342 316 aa15.03■□□□□ -0
CLN3-262ENST00000637699 TRAPPC2LQ9UL33 140 aa15.03■□□□□ -0
CLN3-262ENST00000637699 STARD9Q9P2P6 4700 aa15.02■□□□□ -0
CLN3-262ENST00000637699 TRAV41A0A0B4J266 112 aa15.02■□□□□ -0
CLN3-262ENST00000637699 TRIM64CA6NLI5 447 aa15.02■□□□□ -0
CLN3-262ENST00000637699 SPINT2O43291 252 aa15.02■□□□□ -0
CLN3-262ENST00000637699 CNTFRP26992 372 aa15.02■□□□□ -0
CLN3-262ENST00000637699 SLURP1P55000 103 aa15.02■□□□□ -0
CLN3-262ENST00000637699 SLC22A6Q4U2R8 563 aa15.02■□□□□ -0
CLN3-262ENST00000637699 DDI2Q5TDH0 399 aa15.02■□□□□ -0
CLN3-262ENST00000637699 ZNF555Q8NEP9 628 aa15.02■□□□□ -0
CLN3-262ENST00000637699 OR4K15Q8NH41 348 aa15.02■□□□□ -0
CLN3-262ENST00000637699 OR1L1Q8NH94 360 aa15.02■□□□□ -0
CLN3-262ENST00000637699 RITA1Q96K30 269 aa15.02■□□□□ -0
CLN3-262ENST00000637699 CITED4Q96RK1 184 aa15.02■□□□□ -0
CLN3-262ENST00000637699 TMEM138Q9NPI0 162 aa15.02■□□□□ -0
CLN3-262ENST00000637699 RPL36Q9Y3U8 105 aaKnown RBP15.02■□□□□ -0
CLN3-262ENST00000637699 FAM90A10PA6NDY2 464 aa15.01□□□□□ -0.01
CLN3-262ENST00000637699 LANCL1O43813 399 aa15.01□□□□□ -0.01
CLN3-262ENST00000637699 HBZP02008 142 aa15.01□□□□□ -0.01
CLN3-262ENST00000637699 CD2P06729 351 aa15.01□□□□□ -0.01
CLN3-262ENST00000637699 ACTBP60709 375 aa15.01□□□□□ -0.01
CLN3-262ENST00000637699 GPR148Q8TDV2 347 aa15.01□□□□□ -0.01
CLN3-262ENST00000637699 RDH12Q96NR8 316 aa15.01□□□□□ -0.01
CLN3-262ENST00000637699 ANKRD60Q9BZ19 345 aa15.01□□□□□ -0.01
CLN3-262ENST00000637699 PAK1IP1Q9NWT1 392 aaPredicted RBP15.01□□□□□ -0.01
CLN3-262ENST00000637699 CHCHD3Q9NX63 227 aaKnown RBP15.01□□□□□ -0.01
CLN3-262ENST00000637699 IGHV7-81A0A0B4J1V7 117 aa15□□□□□ -0.01
CLN3-262ENST00000637699 HLA-DRB1P01911 266 aa15□□□□□ -0.01
CLN3-262ENST00000637699 LIMS3P0CW19 117 aa15□□□□□ -0.01
CLN3-262ENST00000637699 LIMS4P0CW20 117 aa15□□□□□ -0.01
CLN3-262ENST00000637699 GTF2F2P13984 249 aa15□□□□□ -0.01
CLN3-262ENST00000637699 BLVRBP30043 206 aaPredicted RBP15□□□□□ -0.01
CLN3-262ENST00000637699 PPP3R1P63098 170 aa15□□□□□ -0.01
CLN3-262ENST00000637699 SRSF7Q16629 238 aaKnown RBP eCLIP15□□□□□ -0.01
CLN3-262ENST00000637699 TMEM106AQ96A25 262 aa15□□□□□ -0.01
CLN3-262ENST00000637699 ORAI1Q96D31 301 aa15□□□□□ -0.01
CLN3-262ENST00000637699 ZNF251Q9BRH9 671 aa15□□□□□ -0.01
CLN3-262ENST00000637699 GHITMQ9H3K2 345 aa15□□□□□ -0.01
CLN3-262ENST00000637699 RAB9BQ9NP90 201 aa15□□□□□ -0.01
CLN3-262ENST00000637699 FGF20Q9NP95 211 aaPredicted RBP15□□□□□ -0.01
CLN3-262ENST00000637699 ETAA1Q9NY74 926 aa15□□□□□ -0.01
CLN3-262ENST00000637699 CSMD3Q7Z407 3707 aa15□□□□□ -0.01
CLN3-262ENST00000637699 MCRIP1C9JLW8 97 aa14.99□□□□□ -0.01
CLN3-262ENST00000637699 LINC01619G3V211 115 aa14.99□□□□□ -0.01
CLN3-262ENST00000637699 ZNF780AO75290 641 aaPredicted RBP14.99□□□□□ -0.01
CLN3-262ENST00000637699 BDKRB2P30411 391 aa14.99□□□□□ -0.01
CLN3-262ENST00000637699 ADARB1P78563 741 aaKnown RBP14.99□□□□□ -0.01
CLN3-262ENST00000637699 RCN1Q15293 331 aa14.99□□□□□ -0.01
CLN3-262ENST00000637699 TMEM30BQ3MIR4 351 aa14.99□□□□□ -0.01
CLN3-262ENST00000637699 C6orf183Q5T699 404 aa14.99□□□□□ -0.01
CLN3-262ENST00000637699 XAF1Q6GPH4 301 aa14.99□□□□□ -0.01
CLN3-262ENST00000637699 MINDY2Q8NBR6 621 aa14.99□□□□□ -0.01
CLN3-262ENST00000637699 OR6Q1Q8NGQ2 317 aa14.99□□□□□ -0.01
CLN3-262ENST00000637699 CASTOR1Q8WTX7 329 aa14.99□□□□□ -0.01
CLN3-262ENST00000637699 ARPC1AQ92747 370 aa14.99□□□□□ -0.01
CLN3-262ENST00000637699 MAGEA13PA6NCF6 341 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 NBR2O15453 112 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 RCC1P18754 421 aaPredicted RBP14.98□□□□□ -0.01
CLN3-262ENST00000637699 ETV1P50549 477 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 ECSCRQ19T08 205 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 C5orf64Q2M2E5 130 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 STEAP3Q658P3 488 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 LIN54Q6MZP7 749 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 ACSM6Q6P461 480 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 CYGBQ8WWM9 190 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 MRPL20Q9BYC9 149 aaKnown RBP14.98□□□□□ -0.01
CLN3-262ENST00000637699 TOLLIPQ9H0E2 274 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 SPACA1Q9HBV2 294 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 OR2S2Q9NQN1 319 aa14.98□□□□□ -0.01
CLN3-262ENST00000637699 IGHV4OR15-8A0A075B7B6 117 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 A0A087WW49 117 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 A0A1W2PN81 502 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 ANKRD65E5RJM6 399 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 CHRNA7P36544 502 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 GNMTQ14749 295 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 MORN2Q502X0 79 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 RAB12Q6IQ22 244 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 C5orf24Q7Z6I8 188 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 OR52L2PQ8NGH6 319 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 ZNF184Q99676 751 aaPredicted RBP14.97□□□□□ -0.01
CLN3-262ENST00000637699 NABP2Q9BQ15 211 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms