RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MMP27Q9H306 513 aa15.42■□□□□ 0.06
CLN3-260ENST00000637578 TRAV39A0A0B4J263 110 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 TMEM30CPA0ZSE6 113 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 FOXI3A8MTJ6 420 aaPredicted RBP15.41■□□□□ 0.06
CLN3-260ENST00000637578 C15orf65H3BRN8 121 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 H3BUI4 141 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 MT-ND4P03905 459 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 BRS3P32247 399 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 ZNF497Q6ZNH5 498 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 GAPTQ8N292 157 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 KLHDC1Q8N7A1 406 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 OR56B1Q8NGI3 324 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 RFESDQ8TAC1 157 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 WIPF2Q8TF74 440 aaPredicted RBP15.41■□□□□ 0.06
CLN3-260ENST00000637578 SULT4A1Q9BR01 284 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 PRSS22Q9GZN4 317 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 ABRACLQ9P1F3 81 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 PSG11Q9UQ72 335 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 ETV7Q9Y603 341 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 MEGF8Q7Z7M0 2845 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 UBE2QL1A1L167 161 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 CCDC160A6NGH7 325 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 GLAP06280 429 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 RORCP51449 518 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 TMEM50BP56557 158 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 BLCAPP62952 87 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 RBM39Q14498 530 aaKnown RBP15.41■□□□□ 0.06
CLN3-260ENST00000637578 HABP2Q14520 560 aaPredicted RBP15.41■□□□□ 0.06
CLN3-260ENST00000637578 MOGAT2Q3SYC2 334 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 C16orf82Q7Z2V1 217 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 SLC25A38Q96DW6 304 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 ETAA1Q9NY74 926 aa15.41■□□□□ 0.06
CLN3-260ENST00000637578 RAB27BO00194 218 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 ORC5O43913 435 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 ARHGDIBP52566 201 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 PLAC9Q5JTB6 97 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 CCDC144NLQ6NUI1 221 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 Q6ZS46 218 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 Q6ZTK2 550 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 OR52M1Q8NGK5 317 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 KCTD12Q96CX2 325 aaKnown RBP15.4■□□□□ 0.06
CLN3-260ENST00000637578 ARHGAP5-AS1Q96IT6 56 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 FAAP24Q9BTP7 215 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 WNT10AQ9GZT5 417 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 ATG5Q9H1Y0 275 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 PLEKHJ1Q9NW61 149 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 RHBDL2Q9NX52 303 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 SPATA2Q9UM82 520 aa15.4■□□□□ 0.06
CLN3-260ENST00000637578 METTL21EPA6NDL7 271 aa15.39■□□□□ 0.05
CLN3-260ENST00000637578 FAM90A9PA6NNJ1 464 aa15.39■□□□□ 0.05
CLN3-260ENST00000637578 CD24P25063 80 aa15.39■□□□□ 0.05
CLN3-260ENST00000637578 FBLN7Q53RD9 439 aa15.39■□□□□ 0.05
CLN3-260ENST00000637578 OR10R2Q8NGX6 335 aa15.39■□□□□ 0.05
CLN3-260ENST00000637578 LEAP2Q969E1 77 aa15.39■□□□□ 0.05
CLN3-260ENST00000637578 HSF4Q9ULV5 492 aa15.39■□□□□ 0.05
CLN3-260ENST00000637578 AMMECR1Q9Y4X0 333 aaPredicted RBP15.39■□□□□ 0.05
CLN3-260ENST00000637578 LOXL3P58215 753 aa15.38■□□□□ 0.05
CLN3-260ENST00000637578 C2orf68Q2NKX9 166 aa15.38■□□□□ 0.05
CLN3-260ENST00000637578 THNSL2Q86YJ6 484 aa15.38■□□□□ 0.05
CLN3-260ENST00000637578 RAB3CQ96E17 227 aa15.38■□□□□ 0.05
CLN3-260ENST00000637578 RBM14Q96PK6 669 aaKnown RBP15.38■□□□□ 0.05
CLN3-260ENST00000637578 PECRQ9BY49 303 aa15.38■□□□□ 0.05
CLN3-260ENST00000637578 RSL24D1Q9UHA3 163 aaKnown RBP15.38■□□□□ 0.05
CLN3-260ENST00000637578 CA11O75493 328 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 OR2F2O95006 317 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 TSPAN15O95858 294 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 IGHV3-7P01780 117 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 VSIG10L2P0DP72 767 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 ZNF182P17025 639 aaPredicted RBP15.37■□□□□ 0.05
CLN3-260ENST00000637578 MNDAP41218 407 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 SAMD12Q8N8I0 201 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 C8orf31Q8N9H6 132 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 DYNC2LI1Q8TCX1 351 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 ARL11Q969Q4 196 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 OCSTAMPQ9BR26 566 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 COMMD3Q9UBI1 195 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 KCNK7Q9Y2U2 307 aa15.37■□□□□ 0.05
CLN3-260ENST00000637578 AMY1AP04745 511 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 AMY2AP04746 511 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 MADCAM1Q13477 382 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 LTC4SQ16873 150 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 LINC00311Q8N616 119 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 CCDC107Q8WV48 283 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 TOMM40LQ969M1 308 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 RPEQ96AT9 228 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 AKR1E2Q96JD6 320 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 SMIM31A0A1B0GVY4 71 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 A0A1W2PPI3 338 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 DPPA5A6NC42 116 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 HIST1H1DP16402 221 aaKnown RBP15.36■□□□□ 0.05
CLN3-260ENST00000637578 GNB3P16520 340 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 DIAPH2-AS1Q14236 149 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 Q3ZCU0 254 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 UBE2NLQ5JXB2 153 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 OR4K15Q8NH41 348 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 MRPL30Q8TCC3 161 aaKnown RBP15.36■□□□□ 0.05
CLN3-260ENST00000637578 ACOT12Q8WYK0 555 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 AP3S1Q92572 193 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 SLC25A33Q9BSK2 321 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 GFOD1Q9NXC2 390 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms