RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 RFESDQ8TAC1 157 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 KCTD12Q96CX2 325 aaKnown RBP14.74□□□□□ -0.05
CLN3-259ENST00000637551 ARHGAP5-AS1Q96IT6 56 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 AKR1E2Q96JD6 320 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 YPEL2Q96QA6 119 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 PECRQ9BY49 303 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 BEX1Q9HBH7 125 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 C1RLQ9NZP8 487 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 GNG12Q9UBI6 72 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 DAPK2Q9UIK4 370 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 MFNGO00587 321 aa14.73□□□□□ -0.05
CLN3-259ENST00000637551 RAG2P55895 527 aa14.73□□□□□ -0.05
CLN3-259ENST00000637551 MRPS15P82914 257 aaKnown RBP14.73□□□□□ -0.05
CLN3-259ENST00000637551 PLAC9Q5JTB6 97 aa14.73□□□□□ -0.05
CLN3-259ENST00000637551 DYNAPQ8N1N2 210 aa14.73□□□□□ -0.05
CLN3-259ENST00000637551 ZNF439Q8NDP4 499 aa14.73□□□□□ -0.05
CLN3-259ENST00000637551 OR10X1Q8NGY0 326 aa14.73□□□□□ -0.05
CLN3-259ENST00000637551 CCDC107Q8WV48 283 aa14.73□□□□□ -0.05
CLN3-259ENST00000637551 RPEQ96AT9 228 aa14.73□□□□□ -0.05
CLN3-259ENST00000637551 CMSS1Q9BQ75 279 aaKnown RBP14.73□□□□□ -0.05
CLN3-259ENST00000637551 NPFFR1Q9GZQ6 430 aa14.73□□□□□ -0.05
CLN3-259ENST00000637551 AK3Q9UIJ7 227 aa14.73□□□□□ -0.05
CLN3-259ENST00000637551 GSTP1P09211 210 aaKnown RBP14.72□□□□□ -0.05
CLN3-259ENST00000637551 KIR2DS4P43632 304 aa14.72□□□□□ -0.05
CLN3-259ENST00000637551 PITPNAQ00169 270 aa14.72□□□□□ -0.05
CLN3-259ENST00000637551 KIR2DS1Q14954 304 aa14.72□□□□□ -0.05
CLN3-259ENST00000637551 FAM71F2Q6NXP2 309 aa14.72□□□□□ -0.05
CLN3-259ENST00000637551 BAIAP2L2Q6UXY1 529 aa14.72□□□□□ -0.05
CLN3-259ENST00000637551 ANKRD13BQ86YJ7 626 aa14.72□□□□□ -0.05
CLN3-259ENST00000637551 TOMM40LQ969M1 308 aa14.72□□□□□ -0.05
CLN3-259ENST00000637551 BCL7BQ9BQE9 202 aa14.72□□□□□ -0.05
CLN3-259ENST00000637551 FUNDC2Q9BWH2 189 aa14.72□□□□□ -0.05
CLN3-259ENST00000637551 CHMP1AQ9HD42 196 aaPredicted RBP14.72□□□□□ -0.05
CLN3-259ENST00000637551 OR2S2Q9NQN1 319 aa14.72□□□□□ -0.05
CLN3-259ENST00000637551 SPATA2Q9UM82 520 aa14.72□□□□□ -0.05
CLN3-259ENST00000637551 A6NDX4 124 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 FAM90A9PA6NNJ1 464 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 M0QZK8 103 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 GABARAPO95166 117 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 CD3GP09693 182 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 DTYMKP23919 212 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 SERPINB10P48595 397 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 ST6GALNAC6Q969X2 333 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 CMTM3Q96MX0 182 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 TOLLIPQ9H0E2 274 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 Q9N2K0 584 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 RHBDL2Q9NX52 303 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 KCNK7Q9Y2U2 307 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 HILPDAQ9Y5L2 63 aa14.71□□□□□ -0.05
CLN3-259ENST00000637551 TRAV39A0A0B4J263 110 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 CLPSL1A2RUU4 121 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 GAPDHP04406 335 aaKnown RBP14.7□□□□□ -0.06
CLN3-259ENST00000637551 SLC2A2P11168 524 aaPredicted RBP14.7□□□□□ -0.06
CLN3-259ENST00000637551 ALDH3B2P48448 385 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 EFNB2P52799 333 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 HLA-DRB3P79483 266 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 PNLIPRP3Q17RR3 467 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 MORN2Q502X0 79 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 Q8N2B8 174 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 OR4C13Q8NGP0 309 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 OR1L1Q8NH94 360 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 LGALS14Q8TCE9 139 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 EDARADDQ8WWZ3 215 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 SLC25A46Q96AG3 418 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 ZNF747Q9BV97 191 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 DCSTAMPQ9H295 470 aa14.7□□□□□ -0.06
CLN3-259ENST00000637551 A0A1W2PPI3 338 aa14.69□□□□□ -0.06
CLN3-259ENST00000637551 HSD17B6O14756 317 aa14.69□□□□□ -0.06
CLN3-259ENST00000637551 LANCL1O43813 399 aa14.69□□□□□ -0.06
CLN3-259ENST00000637551 FAM106CPP0CH98 169 aa14.69□□□□□ -0.06
CLN3-259ENST00000637551 RELBQ01201 579 aa14.69□□□□□ -0.06
CLN3-259ENST00000637551 MXD1Q05195 221 aa14.69□□□□□ -0.06
CLN3-259ENST00000637551 IZUMO1Q8IYV9 350 aa14.69□□□□□ -0.06
CLN3-259ENST00000637551 OR4A4PQ8NGN8 299 aa14.69□□□□□ -0.06
CLN3-259ENST00000637551 PHF21AQ96BD5 680 aa14.69□□□□□ -0.06
CLN3-259ENST00000637551 ATG5Q9H1Y0 275 aa14.69□□□□□ -0.06
CLN3-259ENST00000637551 ABCG5Q9H222 651 aa14.69□□□□□ -0.06
CLN3-259ENST00000637551 TGP01266 2768 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 MGAM2Q2M2H8 2515 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 FAM172BPA6NC97 362 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 OR2F2O95006 317 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 ZBTB25P24278 435 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 EBI3Q14213 229 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 MOGAT2Q3SYC2 334 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 HACD4Q5VWC8 232 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 OLFML2AQ68BL7 652 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 SHISA2Q6UWI4 295 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 Q6ZSV7 163 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 C3orf56Q8N813 242 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 OR2AK2Q8NG84 335 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 ACOT12Q8WYK0 555 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 CABLES2Q9BTV7 478 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 ABHD14AQ9BUJ0 271 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 RNF167Q9H6Y7 350 aa14.68□□□□□ -0.06
CLN3-259ENST00000637551 A0A0B4J203 849 aa14.67□□□□□ -0.06
CLN3-259ENST00000637551 TRDCB7Z8K6 153 aa14.67□□□□□ -0.06
CLN3-259ENST00000637551 TFAP2AP05549 437 aa14.67□□□□□ -0.06
CLN3-259ENST00000637551 FCGR3AP08637 254 aa14.67□□□□□ -0.06
CLN3-259ENST00000637551 SNRPBP14678 240 aaKnown RBP14.67□□□□□ -0.06
CLN3-259ENST00000637551 RPS19P39019 145 aaKnown RBP14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms