RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 DPAGT1Q9H3H5 408 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 SPATA2Q9UM82 520 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 AMMECR1Q9Y4X0 333 aaPredicted RBP14.41□□□□□ -0.1
CLN3-247ENST00000636351 HILPDAQ9Y5L2 63 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 MINOS1-NBL1R4GNA1 71 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 A0A087X0M5 115 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 A0A1B0GX30 115 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 SERPINE3A8MV23 424 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 F2RL2O00254 374 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 TALDO1P37837 337 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 RORCP51449 518 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 ARL6IP1Q15041 203 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 HMGN3Q15651 99 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 SSX2Q16385 188 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 HLA-DRB5Q30154 266 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 UTF1Q5T230 341 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 ZNF554Q86TJ5 538 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 BEND2Q8NDZ0 799 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 OR52M1Q8NGK5 317 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 OR10X1Q8NGY0 326 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 RAB2BQ8WUD1 216 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 IL1F10Q8WWZ1 152 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 SLC25A38Q96DW6 304 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 MMP28Q9H239 520 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 GFOD1Q9NXC2 390 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 PSG11Q9UQ72 335 aa14.4□□□□□ -0.1
CLN3-247ENST00000636351 NOTCH1P46531 2555 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 A0A1W2PPE3 182 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 CLPSL1A2RUU4 121 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 NDUFA7O95182 113 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 HLA-DRB3P79483 266 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 LRRC75BQ2VPJ9 315 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 CDNFQ49AH0 187 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 UBE2NLQ5JXB2 153 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 TMEM86BQ8N661 226 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 SAMD12Q8N8I0 201 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 CREB3L1Q96BA8 519 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 GALMQ96C23 342 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 KCTD12Q96CX2 325 aaKnown RBP14.39□□□□□ -0.11
CLN3-247ENST00000636351 MALSU1Q96EH3 234 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 AJUBAQ96IF1 538 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 CITED1Q99966 193 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 OR2S2Q9NQN1 319 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 ABCB10Q9NRK6 738 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 DPM3Q9P2X0 92 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 MGAT4AQ9UM21 535 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 KCNK7Q9Y2U2 307 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 POMT1Q9Y6A1 747 aa14.39□□□□□ -0.11
CLN3-247ENST00000636351 PRKDCP78527 4128 aaKnown RBP14.38□□□□□ -0.11
CLN3-247ENST00000636351 TRBV6-6A0A0A6YYG2 114 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 CCDC160A6NGH7 325 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 H3BUX3 64 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 J3QR06 171 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 IGLV1-47P01700 117 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 CEACAM3P40198 252 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 IER3P46695 156 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 TMBIM6P55061 237 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 KRTAP10-3P60369 221 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 LDLRAD2Q5SZI1 272 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 FAM53AQ6NSI3 398 aaPredicted RBP14.38□□□□□ -0.11
CLN3-247ENST00000636351 ZNF880Q6PDB4 577 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 Q6ZPA2 131 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 C5orf24Q7Z6I8 188 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 IZUMO1Q8IYV9 350 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 AP3S1Q92572 193 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 SSX3Q99909 188 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 Q9N2K0 584 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 DIABLOQ9NR28 239 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 COMMD3Q9UBI1 195 aa14.38□□□□□ -0.11
CLN3-247ENST00000636351 TRAV18A0A075B6X5 111 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 TMEM235A6NFC5 223 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 LEUTXA8MZ59 168 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 BUB1B-PAK6H3BSN5 160 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 M0QZ24 198 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 FCGR3AP08637 254 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 ARHGDIBP52566 201 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 LOXL3P58215 753 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 GNG2P59768 71 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 GNMTQ14749 295 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 SPCS2Q15005 226 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 DYNAPQ8N1N2 210 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 OR52L2PQ8NGH6 319 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 OR5R1Q8NH85 324 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 TOMM40LQ969M1 308 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 RPEQ96AT9 228 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 BCL7BQ9BQE9 202 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 MEGF9Q9H1U4 602 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 MMP27Q9H306 513 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 JPT1Q9UK76 154 aa14.37□□□□□ -0.11
CLN3-247ENST00000636351 A0A0A6YYH2 397 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 A6NJ64 397 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 TIMM23O14925 209 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 RGS11O94810 467 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 GSTP1P09211 210 aaKnown RBP14.36□□□□□ -0.11
CLN3-247ENST00000636351 IL3RAP26951 378 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 SOX6P35712 828 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 PPP1CCP36873 323 aaKnown RBP14.36□□□□□ -0.11
CLN3-247ENST00000636351 MADCAM1Q13477 382 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 TPTE2P1Q5T6R2 138 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 HACD4Q5VWC8 232 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms