RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 LNP1A1A4G5 178 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 SYNGR2O43760 224 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 CD59P13987 128 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 ZNF146Q15072 292 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 TBC1D28Q2M2D7 210 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 ZNF585BQ52M93 769 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 THNSL2Q86YJ6 484 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 CYB561D1Q8N8Q1 229 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 SCCPDHQ8NBX0 429 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 IL1F10Q8WWZ1 152 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 OR51B6Q9H340 312 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 LIN7CQ9NUP9 197 aaKnown RBP10.8□□□□□ -0.68
LINC00540-203ENST00000631321 IL17BQ9UHF5 180 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 ZDBF2Q9HCK1 2354 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 FREM2Q5SZK8 3169 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 LOC102723971A0A1B0GUV8 181 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 PGA5P0DJD9 388 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 TMEM267Q0VDI3 215 aaPredicted RBP10.8□□□□□ -0.68
LINC00540-203ENST00000631321 IZUMO4Q1ZYL8 232 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 SPATA46Q5T0L3 261 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 ADAM5Q6NVV9 412 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 SLC35E3Q7Z769 313 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 ZNF429Q86V71 674 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 ZNF525Q8N782 197 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 FER1L6-AS2Q96M78 137 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 TCEAL7Q9BRU2 100 aa10.8□□□□□ -0.68
LINC00540-203ENST00000631321 PSMG3Q9BT73 122 aaPredicted RBP10.8□□□□□ -0.68
LINC00540-203ENST00000631321 PARD6GQ9BYG4 376 aaPredicted RBP10.8□□□□□ -0.68
LINC00540-203ENST00000631321 H3BP45 60 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 SMPD2O60906 423 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 IFNA17P01571 189 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 FABP9Q0Z7S8 132 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 IGFBP7Q16270 282 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 RBMS3Q6XE24 437 aaKnown RBP10.79□□□□□ -0.68
LINC00540-203ENST00000631321 RNASE11Q8TAA1 199 aaKnown RBP10.79□□□□□ -0.68
LINC00540-203ENST00000631321 MBD3L1Q8WWY6 194 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 SPRR3Q9UBC9 169 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 RNF150Q9ULK6 438 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 CXorf65A6NEN9 183 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 H0YL77 283 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 AP4M1O00189 453 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 SIRPB1O00241 398 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 PPIHO43447 177 aaKnown RBP10.79□□□□□ -0.68
LINC00540-203ENST00000631321 CD46P15529 392 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 TAGLN2P37802 199 aaKnown RBP10.79□□□□□ -0.68
LINC00540-203ENST00000631321 UBE2KP61086 200 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 DLK1P80370 383 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.79□□□□□ -0.68
LINC00540-203ENST00000631321 TVP23CQ96ET8 276 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 SIRT7Q9NRC8 400 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 PSENENQ9NZ42 101 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 TRAPPC2LQ9UL33 140 aa10.79□□□□□ -0.68
LINC00540-203ENST00000631321 TRGV5A0A0B4J1U4 118 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 TRAV39A0A0B4J263 110 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 PPP1CBP62140 327 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 ARL16Q0P5N6 197 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 GABRA6Q16445 453 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 HAPLN4Q86UW8 402 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 MYPOPQ86VE0 399 aaPredicted RBP10.78□□□□□ -0.68
LINC00540-203ENST00000631321 SCGB1C1Q8TD33 95 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 NIPSNAP3BQ9BS92 247 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 RPRMQ9NS64 109 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 PPP1R3CQ9UQK1 317 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 ZNF407Q9C0G0 2248 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 FAM90A26D6RGX4 464 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 SH2D1BO14796 132 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 S100A9P06702 114 aaKnown RBP10.78□□□□□ -0.68
LINC00540-203ENST00000631321 FBP1P09467 338 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 RAC2P15153 192 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 CBR1P16152 277 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 OR2B8PP59922 312 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 MRPL49Q13405 166 aaKnown RBP10.78□□□□□ -0.68
LINC00540-203ENST00000631321 LRRC75BQ2VPJ9 315 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 ZNF766Q5HY98 468 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 RNFT1Q5M7Z0 435 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 SLC25A24Q6NUK1 477 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 DRAM1Q8N682 238 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 DEFB127Q9H1M4 99 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 ZDHHC11Q9H8X9 412 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 TMEM9BQ9NQ34 198 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 CISD1Q9NZ45 108 aaKnown RBP10.78□□□□□ -0.68
LINC00540-203ENST00000631321 TECTAO75443 2155 aa10.78□□□□□ -0.68
LINC00540-203ENST00000631321 IQCF6A8MYZ5 107 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 CELA3BP08861 270 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 IAPPP10997 89 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 HBG1P69891 147 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 HBG2P69892 147 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 SERF2P84101 59 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 PLA2G2CQ5R387 149 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 P4HA3Q7Z4N8 544 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 GMPPAQ96IJ6 420 aaPredicted RBP10.77□□□□□ -0.68
LINC00540-203ENST00000631321 ZNF251Q9BRH9 671 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 RSG1Q9BU20 258 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 OR2J1Q9GZK6 312 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 HES4Q9HCC6 221 aa10.77□□□□□ -0.68
LINC00540-203ENST00000631321 DNAJC13O75165 2243 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 TMEM210A6NLX4 147 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 RNF212BA8MTL3 300 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 ZNF727A8MUV8 499 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 C1QTNF9BB2RNN3 333 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms