RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 HTD2P86397 168 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 PLAC9Q5JTB6 97 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 ZNF880Q6PDB4 577 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 CROCCP3Q8IVE0 287 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 OCSTAMPQ9BR26 566 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 C12orf4Q9NQ89 552 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 DNHD1Q96M86 4753 aa16.67■□□□□ 0.26
CLN3-240ENST00000631023 A0A1W2PPE3 182 aa16.67■□□□□ 0.26
CLN3-240ENST00000631023 TMEM127O75204 238 aa16.67■□□□□ 0.26
CLN3-240ENST00000631023 SCAND1P57086 179 aa16.67■□□□□ 0.26
CLN3-240ENST00000631023 ARL6IP1Q15041 203 aa16.67■□□□□ 0.26
CLN3-240ENST00000631023 HMGN3Q15651 99 aa16.67■□□□□ 0.26
CLN3-240ENST00000631023 STEAP3Q658P3 488 aa16.67■□□□□ 0.26
CLN3-240ENST00000631023 JPT1Q9UK76 154 aa16.67■□□□□ 0.26
CLN3-240ENST00000631023 CLPSL1A2RUU4 121 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 A6NDX4 124 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 RAB27BO00194 218 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 TSPAN9O75954 239 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 RGS11O94810 467 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 CD3GP09693 182 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 RAB7AP51149 207 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 MORN2Q502X0 79 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 IDNKQ5T6J7 187 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 Q6ZSV7 163 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 OR10V1Q8NGI7 309 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 NPFFR1Q9GZQ6 430 aa16.66■□□□□ 0.26
CLN3-240ENST00000631023 SCGNO76038 276 aa16.65■□□□□ 0.26
CLN3-240ENST00000631023 SMIM18P0DKX4 95 aa16.65■□□□□ 0.26
CLN3-240ENST00000631023 SNRPBP14678 240 aaKnown RBP16.65■□□□□ 0.26
CLN3-240ENST00000631023 MOGAT2Q3SYC2 334 aa16.65■□□□□ 0.26
CLN3-240ENST00000631023 OLFML2AQ68BL7 652 aa16.65■□□□□ 0.26
CLN3-240ENST00000631023 OR8H3Q8N146 312 aa16.65■□□□□ 0.26
CLN3-240ENST00000631023 OR4C13Q8NGP0 309 aa16.65■□□□□ 0.26
CLN3-240ENST00000631023 OR13F1Q8NGS4 319 aa16.65■□□□□ 0.26
CLN3-240ENST00000631023 IL1F10Q8WWZ1 152 aa16.65■□□□□ 0.26
CLN3-240ENST00000631023 HDHD3Q9BSH5 251 aaPredicted RBP16.65■□□□□ 0.26
CLN3-240ENST00000631023 MRPS26Q9BYN8 205 aaKnown RBP16.65■□□□□ 0.26
CLN3-240ENST00000631023 C16orf95Q9H693 158 aa16.65■□□□□ 0.26
CLN3-240ENST00000631023 RANBP3Q9H6Z4 567 aaPredicted RBP16.65■□□□□ 0.26
CLN3-240ENST00000631023 SERPINE3A8MV23 424 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 HAX1O00165 279 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 YPEL1O60688 119 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 GAPDHP04406 335 aaKnown RBP16.64■□□□□ 0.25
CLN3-240ENST00000631023 HIST1H1DP16402 221 aaKnown RBP16.64■□□□□ 0.25
CLN3-240ENST00000631023 LSM3P62310 102 aaKnown RBP16.64■□□□□ 0.25
CLN3-240ENST00000631023 FAM53AQ6NSI3 398 aaPredicted RBP16.64■□□□□ 0.25
CLN3-240ENST00000631023 CCBE1Q6UXH8 406 aaPredicted RBP16.64■□□□□ 0.25
CLN3-240ENST00000631023 SLC25A48Q6ZT89 311 aaKnown RBP16.64■□□□□ 0.25
CLN3-240ENST00000631023 TMEM219Q86XT9 240 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 OR52L2PQ8NGH6 319 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 LINC01006Q8NI28 216 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 LGALS14Q8TCE9 139 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 YPEL2Q96QA6 119 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 ZNF747Q9BV97 191 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 FUNDC2Q9BWH2 189 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 Q9N2K0 584 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 KCNK7Q9Y2U2 307 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 RNF114Q9Y508 228 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 ETV7Q9Y603 341 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 A0A075B6Q4 140 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 CHST1O43916 411 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 LPLP06858 475 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 FAM106CPP0CH98 169 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 CT45A1Q5HYN5 189 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 LY6G6FQ5SQ64 297 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 ZNF439Q8NDP4 499 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 CT45A3Q8NHU0 189 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 PHF21AQ96BD5 680 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 AKR1E2Q96JD6 320 aa16.64■□□□□ 0.25
CLN3-240ENST00000631023 MFNGO00587 321 aa16.63■□□□□ 0.25
CLN3-240ENST00000631023 HSD17B6O14756 317 aa16.63■□□□□ 0.25
CLN3-240ENST00000631023 GNB3P16520 340 aa16.63■□□□□ 0.25
CLN3-240ENST00000631023 KIR2DS4P43632 304 aa16.63■□□□□ 0.25
CLN3-240ENST00000631023 Q6ZPA2 131 aa16.63■□□□□ 0.25
CLN3-240ENST00000631023 C16orf82Q7Z2V1 217 aa16.63■□□□□ 0.25
CLN3-240ENST00000631023 THNSL2Q86YJ6 484 aa16.63■□□□□ 0.25
CLN3-240ENST00000631023 CAPSLQ8WWF8 208 aa16.63■□□□□ 0.25
CLN3-240ENST00000631023 CD24P25063 80 aa16.62■□□□□ 0.25
CLN3-240ENST00000631023 PPP1CCP36873 323 aaKnown RBP16.62■□□□□ 0.25
CLN3-240ENST00000631023 TALDO1P37837 337 aa16.62■□□□□ 0.25
CLN3-240ENST00000631023 RPS19P39019 145 aaKnown RBP16.62■□□□□ 0.25
CLN3-240ENST00000631023 ZNF134P52741 427 aa16.62■□□□□ 0.25
CLN3-240ENST00000631023 HLA-DRB3P79483 266 aa16.62■□□□□ 0.25
CLN3-240ENST00000631023 ZNF816Q0VGE8 651 aaPredicted RBP16.62■□□□□ 0.25
CLN3-240ENST00000631023 ARFRP1Q13795 201 aa16.62■□□□□ 0.25
CLN3-240ENST00000631023 C5orf24Q7Z6I8 188 aa16.62■□□□□ 0.25
CLN3-240ENST00000631023 RHBDL2Q9NX52 303 aa16.62■□□□□ 0.25
CLN3-240ENST00000631023 A0A1W2PPI3 338 aa16.61■□□□□ 0.25
CLN3-240ENST00000631023 TIMM23O14925 209 aa16.61■□□□□ 0.25
CLN3-240ENST00000631023 SLC31A2O15432 143 aa16.61■□□□□ 0.25
CLN3-240ENST00000631023 TGFBR1P36897 503 aa16.61■□□□□ 0.25
CLN3-240ENST00000631023 DIAPH2-AS1Q14236 149 aa16.61■□□□□ 0.25
CLN3-240ENST00000631023 GNMTQ14749 295 aa16.61■□□□□ 0.25
CLN3-240ENST00000631023 SHISA2Q6UWI4 295 aa16.61■□□□□ 0.25
CLN3-240ENST00000631023 DRAM1Q8N682 238 aa16.61■□□□□ 0.25
CLN3-240ENST00000631023 OR2T6Q8NHC8 308 aa16.61■□□□□ 0.25
CLN3-240ENST00000631023 ST6GALNAC6Q969X2 333 aa16.61■□□□□ 0.25
CLN3-240ENST00000631023 ABHD14AQ9BUJ0 271 aa16.61■□□□□ 0.25
CLN3-240ENST00000631023 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.61■□□□□ 0.25
CLN3-240ENST00000631023 TRDCB7Z8K6 153 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms