RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 TNCP24821 2201 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 ALMS1Q8TCU4 4167 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 TMEM212A6NML5 194 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 FCN1O00602 326 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 GYG2O15488 501 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 TXNL1O43396 289 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 OR7C1O76099 320 aaPredicted RBP4.68□□□□□ -1.66
VRK3-220ENST00000600259 HBZP02008 142 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 LGALS1P09382 135 aaKnown RBP4.68□□□□□ -1.66
VRK3-220ENST00000600259 SNRPBP14678 240 aaKnown RBP4.68□□□□□ -1.66
VRK3-220ENST00000600259 RCC1P18754 421 aaPredicted RBP4.68□□□□□ -1.66
VRK3-220ENST00000600259 RAB3AP20336 220 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 MYF6P23409 242 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 FASP25445 335 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 IL3RAP26951 378 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 BLVRBP30043 206 aaPredicted RBP4.68□□□□□ -1.66
VRK3-220ENST00000600259 GTF2A1P52655 376 aaPredicted RBP4.68□□□□□ -1.66
VRK3-220ENST00000600259 ACTBP60709 375 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 RSU1Q15404 277 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 HAGHQ16775 308 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 C5orf64Q2M2E5 130 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 MPV17LQ2QL34 196 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 DNAL1Q4LDG9 190 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 MORN2Q502X0 79 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 LY6G6FQ5SQ64 297 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 SYT6Q5T7P8 510 aaPredicted RBP4.68□□□□□ -1.66
VRK3-220ENST00000600259 ZNF660Q6AZW8 331 aaPredicted RBP4.68□□□□□ -1.66
VRK3-220ENST00000600259 XAF1Q6GPH4 301 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 SIGIRRQ6IA17 410 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 LIN54Q6MZP7 749 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 CD200R1LQ6Q8B3 271 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 IL34Q6ZMJ4 242 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 LINC00322Q6ZN03 302 aaPredicted RBP4.68□□□□□ -1.66
VRK3-220ENST00000600259 SATL1Q86VE3 508 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 LYPD6Q86Y78 171 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 OR10V1Q8NGI7 309 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 OR6Q1Q8NGQ2 317 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 OR5AK2Q8NH90 309 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 OR1L1Q8NH94 360 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 CASTOR1Q8WTX7 329 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 ISOC1Q96CN7 298 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 ZNF251Q9BRH9 671 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 ALG8Q9BVK2 526 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 JAM3Q9BX67 310 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 MBNL3Q9NUK0 354 aaKnown RBP4.68□□□□□ -1.66
VRK3-220ENST00000600259 MRPS18AQ9NVS2 196 aaKnown RBP4.68□□□□□ -1.66
VRK3-220ENST00000600259 ERVK13-1Q9NX77 482 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 TAS2R4Q9NYW5 299 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 ENOPH1Q9UHY7 261 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 OAZ3Q9UMX2 235 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 ING4Q9UNL4 249 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 AP4S1Q9Y587 144 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 GMPPBQ9Y5P6 360 aa4.68□□□□□ -1.66
VRK3-220ENST00000600259 AIPO00170 330 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 HSPA12AO43301 675 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 PROP1O75360 226 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 GPX5O75715 221 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 SC5DO75845 299 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 HSPB1P04792 205 aaKnown RBP4.67□□□□□ -1.66
VRK3-220ENST00000600259 RPSAP08865 295 aaKnown RBP4.67□□□□□ -1.66
VRK3-220ENST00000600259 LIMS3P0CW19 117 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 LIMS4P0CW20 117 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 IGFBP3P17936 291 aaPredicted RBP4.67□□□□□ -1.66
VRK3-220ENST00000600259 SOX2P48431 317 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 MECP2P51608 486 aaKnown RBP4.67□□□□□ -1.66
VRK3-220ENST00000600259 CX3CL1P78423 397 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 RAB40BQ12829 278 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 GNMTQ14749 295 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 MMDQ15546 238 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 SRSF7Q16629 238 aaKnown RBP eCLIP4.67□□□□□ -1.66
VRK3-220ENST00000600259 MEDAGQ5VYS4 303 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 ZNF833PQ6ZTB9 187 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 LINC00596Q86U02 117 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 HAPLN4Q86UW8 402 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 OR52L2PQ8NGH6 319 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 OR4K15Q8NH41 348 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 RHOXF1Q8NHV9 184 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 ORAI1Q96D31 301 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 CENPNQ96H22 339 aaPredicted RBP4.67□□□□□ -1.66
VRK3-220ENST00000600259 GPER1Q99527 375 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 MRPL20Q9BYC9 149 aaKnown RBP4.67□□□□□ -1.66
VRK3-220ENST00000600259 METTL9Q9H1A3 318 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 TMEM138Q9NPI0 162 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 PARP11Q9NR21 331 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 CHCHD3Q9NX63 227 aaKnown RBP4.67□□□□□ -1.66
VRK3-220ENST00000600259 KIAA1456Q9P272 454 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 DHDHQ9UQ10 334 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 GAB2Q9UQC2 676 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 HERC2O95714 4834 aa4.67□□□□□ -1.66
VRK3-220ENST00000600259 A0A1W2PN81 502 aa4.66□□□□□ -1.66
VRK3-220ENST00000600259 RRHO14718 337 aa4.66□□□□□ -1.66
VRK3-220ENST00000600259 ARPC1BO15143 372 aaKnown RBP4.66□□□□□ -1.66
VRK3-220ENST00000600259 NBR2O15453 112 aa4.66□□□□□ -1.66
VRK3-220ENST00000600259 ST8SIA5O15466 376 aa4.66□□□□□ -1.66
VRK3-220ENST00000600259 MAGEB3O15480 346 aa4.66□□□□□ -1.66
VRK3-220ENST00000600259 OGG1O15527 345 aa4.66□□□□□ -1.66
VRK3-220ENST00000600259 SPINT2O43291 252 aa4.66□□□□□ -1.66
VRK3-220ENST00000600259 YPEL1O60688 119 aa4.66□□□□□ -1.66
VRK3-220ENST00000600259 FADS2O95864 444 aaKnown RBP4.66□□□□□ -1.66
VRK3-220ENST00000600259 IGHV3-11P01762 117 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms