RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 IGHV3-43DP0DP04 118 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 MNDAP41218 407 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 HTD2P86397 168 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 PLA2G7Q13093 441 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 STEAP3Q658P3 488 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 MOB1BQ7L9L4 216 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 THNSL2Q86YJ6 484 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 WIPF2Q8TF74 440 aaPredicted RBP12.91□□□□□ -0.34
TRIM28-213ENST00000598355 PTX4Q96A99 478 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 SERTAD4Q9NUC0 356 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 PLEKHJ1Q9NW61 149 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 JPT1Q9UK76 154 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 HSD17B6O14756 317 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 TIMM23O14925 209 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 SLC31A2O15432 143 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 TNFAIP8O95379 198 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 RAB6AP20340 208 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 NEDD8Q15843 81 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 PLAC9Q5JTB6 97 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 TPRA1Q86W33 373 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 OR56B1Q8NGI3 324 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 OR10X1Q8NGY0 326 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 OR2T6Q8NHC8 308 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 RBM14Q96PK6 669 aaKnown RBP12.9□□□□□ -0.34
TRIM28-213ENST00000598355 OR51E2Q9H255 320 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 RIMS4Q9H426 269 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-213ENST00000598355 AK3Q9UIJ7 227 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 RAB22AQ9UL26 194 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 SIGLEC9Q9Y336 463 aa12.9□□□□□ -0.34
TRIM28-213ENST00000598355 A0A1W2PPE3 182 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 NOTOA8MTQ0 251 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 AMY1AP04745 511 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 AMY2AP04746 511 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 CD24P25063 80 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 ZNF134P52741 427 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 EBI3Q14213 229 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 GNMTQ14749 295 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 MORN2Q502X0 79 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 CT45A1Q5HYN5 189 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 IZUMO1Q8IYV9 350 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 CT45A3Q8NHU0 189 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 ARHGAP5-AS1Q96IT6 56 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 PECRQ9BY49 303 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 C12orf4Q9NQ89 552 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 KCNIP1Q9NZI2 227 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 GNG12Q9UBI6 72 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 SSR3Q9UNL2 185 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 KCNK7Q9Y2U2 307 aa12.89□□□□□ -0.35
TRIM28-213ENST00000598355 IGHV1-3A0A0C4DH29 117 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 RAB27BO00194 218 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 YPEL1O60688 119 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 GADD45AP24522 165 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 VEGFCP49767 419 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 Q6ZS46 218 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 C5orf24Q7Z6I8 188 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 PRR18Q8N4B5 295 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 DRAM1Q8N682 238 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 OR56B4Q8NH76 319 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 RTN4IP1Q8WWV3 396 aaPredicted RBP12.88□□□□□ -0.35
TRIM28-213ENST00000598355 AKR1E2Q96JD6 320 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 YPEL2Q96QA6 119 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 HDHD3Q9BSH5 251 aaPredicted RBP12.88□□□□□ -0.35
TRIM28-213ENST00000598355 SLC25A33Q9BSK2 321 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 PRSS22Q9GZN4 317 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 WNT10AQ9GZT5 417 aa12.88□□□□□ -0.35
TRIM28-213ENST00000598355 A0A087WXM4 84 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 A0A0B4J203 849 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 MFNGO00587 321 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 TXNL1O43396 289 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 GAPDHP04406 335 aaKnown RBP12.87□□□□□ -0.35
TRIM28-213ENST00000598355 SNRNP70P08621 437 aaKnown RBP12.87□□□□□ -0.35
TRIM28-213ENST00000598355 CD36P16671 472 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 BLCAPP62952 87 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 HLA-DRB3P79483 266 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 MOGAT2Q3SYC2 334 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 Q6ZTK2 550 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 ODF3L1Q8IXM7 274 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 KLHDC1Q8N7A1 406 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 OR10V1Q8NGI7 309 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 GALMQ96C23 342 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 KCTD7Q96MP8 289 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 OR2S2Q9NQN1 319 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.87□□□□□ -0.35
TRIM28-213ENST00000598355 MGAT4AQ9UM21 535 aa12.87□□□□□ -0.35
TRIM28-213ENST00000598355 CMYA5Q8N3K9 4069 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 M0QZK8 103 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 LANCL1O43813 399 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 FAM106CPP0CH98 169 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 SLC2A2P11168 524 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-213ENST00000598355 IL3RAP26951 378 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 PPP1CCP36873 323 aaKnown RBP12.86□□□□□ -0.35
TRIM28-213ENST00000598355 SFXN4Q6P4A7 337 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 Q8N6K4 173 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 TSPAN14Q8NG11 270 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 OR52L2PQ8NGH6 319 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 OR10R2Q8NGX6 335 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 CHCHD6Q9BRQ6 235 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 ABHD14AQ9BUJ0 271 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 RNF167Q9H6Y7 350 aa12.86□□□□□ -0.35
TRIM28-213ENST00000598355 Q9N2K0 584 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms