RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 TAF9BQ9HBM6 251 aa9.48□□□□□ -0.89
LIG3-204ENST00000585740 UFSP2Q9NUQ7 469 aa9.48□□□□□ -0.89
LIG3-204ENST00000585740 JKAMPQ9P055 326 aa9.48□□□□□ -0.89
LIG3-204ENST00000585740 ZDHHC8Q9ULC8 765 aa9.48□□□□□ -0.89
LIG3-204ENST00000585740 RBM7Q9Y580 266 aaKnown RBP9.48□□□□□ -0.89
LIG3-204ENST00000585740 POMT1Q9Y6A1 747 aa9.48□□□□□ -0.89
LIG3-204ENST00000585740 USP9XQ93008 2570 aaPredicted RBP9.47□□□□□ -0.89
LIG3-204ENST00000585740 VSTM5A8MXK1 200 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 I3L521 148 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 WNT9BO14905 357 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 MBPP02686 304 aaPredicted RBP9.47□□□□□ -0.89
LIG3-204ENST00000585740 MMP9P14780 707 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 IL2RGP31785 369 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 OR3A1P47881 315 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 COL10A1Q03692 680 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 ALKBH2Q6NS38 261 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 FOXRED2Q8IWF2 684 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 EIF4E3Q8N5X7 224 aaKnown RBP9.47□□□□□ -0.89
LIG3-204ENST00000585740 GALMQ96C23 342 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 SNRNP40Q96DI7 357 aaKnown RBP9.47□□□□□ -0.89
LIG3-204ENST00000585740 SNX22Q96L94 193 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 DIRC2Q96SL1 478 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 NCOR1P1Q9H4R4 102 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 PLEKHF2Q9H8W4 249 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 RAB9BQ9NP90 201 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 NGBQ9NPG2 151 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 CYTL1Q9NRR1 136 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 LIN7CQ9NUP9 197 aaKnown RBP9.47□□□□□ -0.89
LIG3-204ENST00000585740 SDHAF2Q9NX18 166 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 UBR5O95071 2799 aaPredicted RBP9.47□□□□□ -0.89
LIG3-204ENST00000585740 TEX15Q9BXT5 2789 aa9.47□□□□□ -0.89
LIG3-204ENST00000585740 KIAA2026Q5HYC2 2103 aa9.46□□□□□ -0.89
LIG3-204ENST00000585740 IGHV3-64DA0A0J9YX35 117 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 MFSD2BA6NFX1 497 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 MSGN1A6NI15 193 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 ZSCAN5BA6NJL1 495 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 NUDT19A8MXV4 375 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 ATP6V1G2-DDX39BF2Z307 99 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 PSPNO60542 156 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 JTBO76095 146 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 SERPINE2P07093 398 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 PRDX2P32119 198 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 CEACAM6P40199 344 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 NKX2-1P43699 371 aaPredicted RBP9.46□□□□□ -0.9
LIG3-204ENST00000585740 CASP6P55212 293 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 P2RX3P56373 397 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 TESK1Q15569 626 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 MSMPQ1L6U9 139 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 TOR2AQ5JU69 321 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 KRBOX4Q5JUW0 171 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 C5orf24Q7Z6I8 188 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 LRP11Q86VZ4 500 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 TCTEX1D1Q8N7M0 179 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 RNF141Q8WVD5 230 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 PCNPQ8WW12 178 aaKnown RBP9.46□□□□□ -0.9
LIG3-204ENST00000585740 RND1Q92730 232 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 NINJ1Q92982 152 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 LSM10Q969L4 123 aaKnown RBP9.46□□□□□ -0.9
LIG3-204ENST00000585740 OR2V2Q96R30 315 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 VKORC1Q9BQB6 163 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 REG4Q9BYZ8 158 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 OR1A1Q9P1Q5 309 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 IL19Q9UHD0 177 aa9.46□□□□□ -0.9
LIG3-204ENST00000585740 RCL1Q9Y2P8 373 aaKnown RBP9.46□□□□□ -0.9
LIG3-204ENST00000585740 BORCS7-ASMTA0A0B4J1R7 106 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 NKX2-6A6NCS4 301 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 C12orf77C9JDV5 145 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 MGST3O14880 152 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 SPINT2O43291 252 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 FGF16O43320 207 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 SPRY3O43610 288 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 ADH4P08319 380 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 PSG2P11465 335 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 GABRA2P47869 451 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 CEBPDP49716 269 aaPredicted RBP9.45□□□□□ -0.9
LIG3-204ENST00000585740 NMSQ5H8A3 153 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 VHLLQ6RSH7 139 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 CCDC28AQ8IWP9 274 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 PRR18Q8N4B5 295 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 ZNF645Q8N7E2 425 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 RELL2Q8NC24 303 aaPredicted RBP9.45□□□□□ -0.9
LIG3-204ENST00000585740 ITLN1Q8WWA0 313 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 COQ2Q96H96 371 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 CXorf58Q96LI9 332 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 MRPL37Q9BZE1 423 aaKnown RBP9.45□□□□□ -0.9
LIG3-204ENST00000585740 SLC25A31Q9H0C2 315 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 FAM212BQ9NTI7 297 aaPredicted RBP9.45□□□□□ -0.9
LIG3-204ENST00000585740 ASF1BQ9NVP2 202 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 KCNS2Q9ULS6 477 aa9.45□□□□□ -0.9
LIG3-204ENST00000585740 PRRC2CQ9Y520 2896 aaKnown RBP9.45□□□□□ -0.9
LIG3-204ENST00000585740 DOPEY2Q9Y3R5 2298 aa9.44□□□□□ -0.9
LIG3-204ENST00000585740 BOD1L1Q8NFC6 3051 aa9.44□□□□□ -0.9
LIG3-204ENST00000585740 A0A1B0GU03 582 aa9.44□□□□□ -0.9
LIG3-204ENST00000585740 KRBOX1C9JBD0 128 aa9.44□□□□□ -0.9
LIG3-204ENST00000585740 C3orf80F5H4A9 247 aa9.44□□□□□ -0.9
LIG3-204ENST00000585740 SHOXO15266 292 aa9.44□□□□□ -0.9
LIG3-204ENST00000585740 ADAM20O43506 726 aa9.44□□□□□ -0.9
LIG3-204ENST00000585740 ATG12O94817 140 aa9.44□□□□□ -0.9
LIG3-204ENST00000585740 LHBP01229 141 aa9.44□□□□□ -0.9
LIG3-204ENST00000585740 HBZP02008 142 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms