RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 GPR132Q9UNW8 380 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 PPP1R3CQ9UQK1 317 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 VSIG4Q9Y279 399 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 KCNIP3Q9Y2W7 256 aa8.46□□□□□ -1.06
SS18-207ENST00000577636 IGKV1D-8A0A087WSZ0 117 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 TEX13DA0A0J9YY54 714 aaPredicted RBP8.45□□□□□ -1.06
SS18-207ENST00000577636 C17orf100A8MU93 164 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 FAM157AC9JC47 383 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 WNT9BO14905 357 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 SLC22A5O76082 557 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 DUS4LO95620 317 aaKnown RBP8.45□□□□□ -1.06
SS18-207ENST00000577636 CTSDP07339 412 aaPredicted RBP8.45□□□□□ -1.06
SS18-207ENST00000577636 CD55P08174 381 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 EPHA1P21709 976 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 COL8A2P25067 703 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 LMO1P25800 156 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 ERP29P30040 261 aaKnown RBP8.45□□□□□ -1.06
SS18-207ENST00000577636 RAP2BP61225 183 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 HLA-DRB3P79483 266 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 DEFA6Q01524 100 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 CD300CQ08708 224 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 SCGB2A2Q13296 93 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 ATXN7L3Q14CW9 347 aaPredicted RBP8.45□□□□□ -1.06
SS18-207ENST00000577636 AWAT1Q58HT5 328 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 C6orf183Q5T699 404 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 SLC35E4Q6ICL7 350 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 TRAT1Q6PIZ9 186 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 ZNF497Q6ZNH5 498 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 NOXA1Q86UR1 476 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 SLC38A6Q8IZM9 456 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 ASCC1Q8N9N2 400 aaKnown RBP8.45□□□□□ -1.06
SS18-207ENST00000577636 CCDC71LQ8N9Z2 235 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 OR2AK2Q8NG84 335 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 OR52B4Q8NGK2 314 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 OR10J5Q8NHC4 309 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 MRPL30Q8TCC3 161 aaKnown RBP8.45□□□□□ -1.06
SS18-207ENST00000577636 FAM216AQ8WUB2 273 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 TOMM40LQ969M1 308 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 ZNF486Q96H40 463 aaPredicted RBP8.45□□□□□ -1.06
SS18-207ENST00000577636 KIRREL1Q96J84 757 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 FYTTD1Q96QD9 318 aaKnown RBP8.45□□□□□ -1.06
SS18-207ENST00000577636 SAP30LQ9HAJ7 183 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 RAB9BQ9NP90 201 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 SLC23A1Q9UHI7 598 aa8.45□□□□□ -1.06
SS18-207ENST00000577636 LOC105371242A0A075B767 164 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 C9orf170A2RU37 121 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 OR5H14A6NHG9 310 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 RFPL4AA6NLU0 287 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 RFPL4AL1F8VTS6 287 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 GOSR2O14653 212 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 HSPA12AO43301 675 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 PPIHO43447 177 aaKnown RBP8.44□□□□□ -1.06
SS18-207ENST00000577636 C1QBP02746 253 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 MSMBP08118 114 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 GIPP09681 153 aaPredicted RBP8.44□□□□□ -1.06
SS18-207ENST00000577636 GABRA2P47869 451 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 UCP3P55916 312 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 FXYD4P59646 89 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 COL10A1Q03692 680 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 DHRS2Q13268 280 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 PPP1R1AQ13522 171 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 PDLIM3Q53GG5 364 aaPredicted RBP8.44□□□□□ -1.06
SS18-207ENST00000577636 AADACL3Q5VUY0 350 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 C17orf107Q6ZR85 190 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 FAM185AQ8N0U4 392 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 DRAXINQ8NBI3 349 aaPredicted RBP8.44□□□□□ -1.06
SS18-207ENST00000577636 OR11H7Q8NGC8 314 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 OR5D13Q8NGL4 314 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 Q8TCH9 128 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 CASTOR1Q8WTX7 329 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 CAPSLQ8WWF8 208 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 HYLS1Q96M11 299 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 PDCD10Q9BUL8 212 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 CHIAQ9BZP6 476 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 DNTTIP1Q9H147 329 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 GCM1Q9NP62 436 aa8.44□□□□□ -1.06
SS18-207ENST00000577636 PIGBOS1A0A0B4J2F0 54 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 OOEPA6NGQ2 149 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 NKX6-3A6NJ46 265 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 PPYP01298 95 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 MUC1P15941 1255 aaPredicted RBP8.43□□□□□ -1.06
SS18-207ENST00000577636 CXCL3P19876 107 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 ZBTB25P24278 435 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 RBMXP38159 391 aaKnown RBP8.43□□□□□ -1.06
SS18-207ENST00000577636 CEBPDP49716 269 aaPredicted RBP8.43□□□□□ -1.06
SS18-207ENST00000577636 HILS1P60008 231 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 CCL8P80075 99 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 BAMBIQ13145 260 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 KCNJ8Q15842 424 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 IGSF11Q5DX21 431 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 KRBOX4Q5JUW0 171 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 ZNF880Q6PDB4 577 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 KCTD9Q7L273 389 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 CMTM1Q8IZ96 169 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 ZNF561Q8N587 486 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 GCSAMQ8N6F7 178 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 ADAD2Q8NCV1 583 aaKnown RBP8.43□□□□□ -1.06
SS18-207ENST00000577636 PLPPR1Q8TBJ4 325 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 MITD1Q8WV92 249 aa8.43□□□□□ -1.06
SS18-207ENST00000577636 IL1F10Q8WWZ1 152 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms