RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 SYS1Q8N2H4 156 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 OR10A7Q8NGE5 316 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 OR5D18Q8NGL1 313 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 RFT1Q96AA3 541 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 C4orf36Q96KX1 117 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 GON7Q9BXV9 100 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 ZNF286AQ9HBT8 521 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 S100A14Q9HCY8 104 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 RAB9BQ9NP90 201 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 ZFP57Q9NU63 452 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 FAM118AQ9NWS6 357 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 PPP1R14DQ9NXH3 145 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 C11orf21Q9P2W6 132 aa7.34□□□□□ -1.23
CIITA-208ENST00000572665 MEIKINA0A087WXM9 373 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 FAM172BPA6NC97 362 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 ANKRD65E5RJM6 399 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 H0YJX3 145 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 RHODO00212 210 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 TSPAN4O14817 238 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 FGF16O43320 207 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 CD2P06729 351 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 CALCBP10092 127 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 RAB3AP20336 220 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 CD24P25063 80 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 POLR2IP36954 125 aaKnown RBP7.33□□□□□ -1.24
CIITA-208ENST00000572665 GLP1RP43220 463 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 GBX2P52951 348 aaPredicted RBP7.33□□□□□ -1.24
CIITA-208ENST00000572665 NANOS3P60323 173 aaKnown RBP7.33□□□□□ -1.24
CIITA-208ENST00000572665 ATXN7L3Q14CW9 347 aaPredicted RBP7.33□□□□□ -1.24
CIITA-208ENST00000572665 RSU1Q15404 277 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 SMN1Q16637 294 aaKnown RBP7.33□□□□□ -1.24
CIITA-208ENST00000572665 DEFB121Q5J5C9 76 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 ELP2Q6IA86 826 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 PARP16Q8N5Y8 322 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 PXT1Q8NFP0 134 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 OR51T1Q8NGJ9 327 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 OR10X1Q8NGY0 326 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 OR5AK2Q8NH90 309 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 TSEN15Q8WW01 171 aaKnown RBP7.33□□□□□ -1.24
CIITA-208ENST00000572665 PELI1Q96FA3 418 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 S100A13Q99584 98 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 PAK1IP1Q9NWT1 392 aaPredicted RBP7.33□□□□□ -1.24
CIITA-208ENST00000572665 CALYQ9NYX4 217 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 IDI2-AS1Q9NZ38 188 aa7.33□□□□□ -1.24
CIITA-208ENST00000572665 EXOGQ9Y2C4 368 aaKnown RBP7.33□□□□□ -1.24
CIITA-208ENST00000572665 A0A0A0MQY5 61 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 IGKV1-12A0A0C4DH73 117 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 ERICH4A6NGS2 130 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 OR4C45A6NMZ5 311 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 SERPINE3A8MV23 424 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 LY6LH3BQJ8 138 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 J3QR06 171 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 J3QRE1 110 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 IL1AP01583 271 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 IGKV1D-12P01611 117 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 ALPLP05186 524 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 SNRNP70P08621 437 aaKnown RBP7.32□□□□□ -1.24
CIITA-208ENST00000572665 TMEM11P17152 192 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 GZMHP20718 246 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 IL3RAP26951 378 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 ALDH3A2P51648 485 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 PAX5Q02548 391 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 C17orf58Q2M2W7 97 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 ZNF691Q5VV52 312 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 TMEM268Q5VZI3 342 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 Q6P435 159 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 LINC00596Q86U02 117 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 OR51A4Q8NGJ6 313 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 CNIH3Q8TBE1 160 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 COQ2Q96H96 371 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 SPACA5Q96QH8 159 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 ZNF649Q9BS31 505 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 KRTAP4-9Q9BYQ8 210 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 FAM192AQ9GZU8 254 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 GMPPBQ9Y5P6 360 aa7.32□□□□□ -1.24
CIITA-208ENST00000572665 PRKDCP78527 4128 aaKnown RBP7.32□□□□□ -1.24
CIITA-208ENST00000572665 CGB1A6NKQ9 187 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 HSPB6O14558 160 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 ZNF780AO75290 641 aaPredicted RBP7.31□□□□□ -1.24
CIITA-208ENST00000572665 GAPDHP04406 335 aaKnown RBP7.31□□□□□ -1.24
CIITA-208ENST00000572665 FAM90A13PP0C7W8 464 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 FAM90A24PP0C7X0 464 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 MYCNOSP40205 109 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 ZP1P60852 638 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 PPP3R1P63098 170 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 EGFEM1PQ0D2K5 195 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 RAB40BQ12829 278 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 CDK5R1Q15078 307 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 KLHL22Q53GT1 634 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 SLC35E3Q7Z769 313 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 LHFPL3Q86UP9 236 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 SATL1Q86VE3 508 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 NTN5Q8WTR8 489 aaPredicted RBP7.31□□□□□ -1.24
CIITA-208ENST00000572665 TNFAIP8L1Q8WVP5 186 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 LGALS12Q96DT0 336 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 NR1H4Q96RI1 486 aaPredicted RBP7.31□□□□□ -1.24
CIITA-208ENST00000572665 C9orf16Q9BUW7 83 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 LINC00574Q9H8X3 128 aa7.31□□□□□ -1.24
CIITA-208ENST00000572665 CHCHD3Q9NX63 227 aaKnown RBP7.31□□□□□ -1.24
CIITA-208ENST00000572665 KIF25Q9UIL4 384 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms