RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 SRD5A3Q9H8P0 318 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 ZNF355PQ9NSJ1 428 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 TAGLN3Q9UI15 199 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 DHDHQ9UQ10 334 aa12.27□□□□□ -0.45
CLK3-223ENST00000568488 C13orf42A0A1B0GVH6 325 aa12.26□□□□□ -0.45
CLK3-223ENST00000568488 ISG15P05161 165 aa12.26□□□□□ -0.45
CLK3-223ENST00000568488 CSN3P07498 182 aa12.26□□□□□ -0.45
CLK3-223ENST00000568488 CRIP2P52943 208 aaPredicted RBP12.26□□□□□ -0.45
CLK3-223ENST00000568488 NPBQ8NG41 125 aa12.26□□□□□ -0.45
CLK3-223ENST00000568488 TNFAIP8L1Q8WVP5 186 aa12.26□□□□□ -0.45
CLK3-223ENST00000568488 TMEM106AQ96A25 262 aa12.26□□□□□ -0.45
CLK3-223ENST00000568488 RDH12Q96NR8 316 aa12.26□□□□□ -0.45
CLK3-223ENST00000568488 MRPL20Q9BYC9 149 aaKnown RBP12.26□□□□□ -0.45
CLK3-223ENST00000568488 FAM192AQ9GZU8 254 aa12.26□□□□□ -0.45
CLK3-223ENST00000568488 ARL8BQ9NVJ2 186 aa12.26□□□□□ -0.45
CLK3-223ENST00000568488 SLC2A8Q9NY64 477 aa12.26□□□□□ -0.45
CLK3-223ENST00000568488 SIGLEC8Q9NYZ4 499 aa12.26□□□□□ -0.45
CLK3-223ENST00000568488 WARS2Q9UGM6 360 aaKnown RBP12.26□□□□□ -0.45
CLK3-223ENST00000568488 KLK5Q9Y337 293 aaPredicted RBP12.26□□□□□ -0.45
CLK3-223ENST00000568488 FCN1O00602 326 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 SPINT2O43291 252 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 FAM107AO95990 144 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 MT-ND4P03905 459 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 CD7P09564 240 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 EGR2P11161 476 aaPredicted RBP12.25□□□□□ -0.45
CLK3-223ENST00000568488 NANOS3P60323 173 aaKnown RBP12.25□□□□□ -0.45
CLK3-223ENST00000568488 TRIM25Q14258 630 aaKnown RBP12.25□□□□□ -0.45
CLK3-223ENST00000568488 TATDN3Q17R31 274 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 ATAD3CQ5T2N8 411 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 CD200R1LQ6Q8B3 271 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 LFNGQ8NES3 379 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 PXT1Q8NFP0 134 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 CLCC1Q96S66 551 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 WFDC10AQ9H1F0 79 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 ADAM30Q9UKF2 790 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 ST3GAL6Q9Y274 331 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 ABCA13Q86UQ4 5058 aa12.25□□□□□ -0.45
CLK3-223ENST00000568488 OR11H12B2RN74 326 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 AIPO00170 330 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 MAGEB3O15480 346 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 SULT1B1O43704 296 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 NDUFA3O95167 84 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 SNRPBP14678 240 aaKnown RBP12.24□□□□□ -0.45
CLK3-223ENST00000568488 EFNB1P98172 346 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 AKIRIN2Q53H80 203 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 OR5D14Q8NGL3 314 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 OR1L1Q8NH94 360 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 RAB9BQ9NP90 201 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 TRAPPC2LQ9UL33 140 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 GAB2Q9UQC2 676 aa12.24□□□□□ -0.45
CLK3-223ENST00000568488 GABRPO00591 440 aa12.23□□□□□ -0.45
CLK3-223ENST00000568488 HTR1AP08908 422 aa12.23□□□□□ -0.45
CLK3-223ENST00000568488 ZNF85Q03923 595 aa12.23□□□□□ -0.45
CLK3-223ENST00000568488 SYT6Q5T7P8 510 aaPredicted RBP12.23□□□□□ -0.45
CLK3-223ENST00000568488 STEAP3Q658P3 488 aa12.23□□□□□ -0.45
CLK3-223ENST00000568488 SERPINA12Q8IW75 414 aa12.23□□□□□ -0.45
CLK3-223ENST00000568488 ADGRG5Q8IZF4 528 aa12.23□□□□□ -0.45
CLK3-223ENST00000568488 STX19Q8N4C7 294 aa12.23□□□□□ -0.45
CLK3-223ENST00000568488 KCTD12Q96CX2 325 aaKnown RBP12.23□□□□□ -0.45
CLK3-223ENST00000568488 FAM107BQ9H098 131 aa12.23□□□□□ -0.45
CLK3-223ENST00000568488 A0A0J9YWU9 116 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 RRHO14718 337 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 GEMIN2O14893 280 aaKnown RBP12.22□□□□□ -0.45
CLK3-223ENST00000568488 HBZP02008 142 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 TFAP2AP05549 437 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 DAPP51397 102 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 DYRK1AQ13627 763 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 ZNF497Q6ZNH5 498 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 OR4K15Q8NH41 348 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 OR52N1Q8NH53 320 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 CANT1Q8WVQ1 401 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 DNAJC9Q8WXX5 260 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 CPNE2Q96FN4 548 aaPredicted RBP12.22□□□□□ -0.45
CLK3-223ENST00000568488 OVOL2Q9BRP0 275 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 OR2S2Q9NQN1 319 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 SLC23A1Q9UHI7 598 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 ING4Q9UNL4 249 aa12.22□□□□□ -0.45
CLK3-223ENST00000568488 A0A0G2JLM5 398 aa12.21□□□□□ -0.45
CLK3-223ENST00000568488 MITFO75030 526 aaPredicted RBP12.21□□□□□ -0.45
CLK3-223ENST00000568488 CDRT1O95170 752 aa12.21□□□□□ -0.45
CLK3-223ENST00000568488 EPHA2P29317 976 aa12.21□□□□□ -0.45
CLK3-223ENST00000568488 OR3A3P47888 321 aa12.21□□□□□ -0.45
CLK3-223ENST00000568488 ADARB1P78563 741 aaKnown RBP12.21□□□□□ -0.45
CLK3-223ENST00000568488 EWSR1Q01844 656 aaKnown RBP eCLIP12.21□□□□□ -0.453e-7■□□□□ 11.1
CLK3-223ENST00000568488 GUCA2BQ16661 112 aa12.21□□□□□ -0.45
CLK3-223ENST00000568488 LGALS9CQ6DKI2 356 aa12.21□□□□□ -0.45
CLK3-223ENST00000568488 OR5T1Q8NG75 326 aa12.21□□□□□ -0.45
CLK3-223ENST00000568488 OR2K2Q8NGT1 345 aa12.21□□□□□ -0.45
CLK3-223ENST00000568488 MRPS24Q96EL2 167 aaKnown RBP12.21□□□□□ -0.45
CLK3-223ENST00000568488 ABHD14AQ9BUJ0 271 aa12.21□□□□□ -0.45
CLK3-223ENST00000568488 IFT22Q9H7X7 185 aa12.21□□□□□ -0.45
CLK3-223ENST00000568488 GSTP1P09211 210 aaKnown RBP12.2□□□□□ -0.46
CLK3-223ENST00000568488 CCR9P51686 369 aa12.2□□□□□ -0.46
CLK3-223ENST00000568488 RBM11P57052 281 aaKnown RBP12.2□□□□□ -0.46
CLK3-223ENST00000568488 RPEL1Q2QD12 228 aa12.2□□□□□ -0.46
CLK3-223ENST00000568488 TMEM30BQ3MIR4 351 aa12.2□□□□□ -0.46
CLK3-223ENST00000568488 MOGAT2Q3SYC2 334 aa12.2□□□□□ -0.46
CLK3-223ENST00000568488 CD300EQ496F6 205 aaPredicted RBP12.2□□□□□ -0.46
CLK3-223ENST00000568488 MORN2Q502X0 79 aa12.2□□□□□ -0.46
CLK3-223ENST00000568488 C6orf183Q5T699 404 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms