RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 MORN2Q502X0 79 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 C6orf183Q5T699 404 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 CEACAM19Q7Z692 300 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 NOL4LQ96MY1 436 aaPredicted RBP11.74□□□□□ -0.53
CLN3-213ENST00000565047 SULT4A1Q9BR01 284 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 TAF9BQ9HBM6 251 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 ISYNA1Q9NPH2 558 aa11.74□□□□□ -0.53
CLN3-213ENST00000565047 A0A0A6YYD4 124 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 SPINT2O43291 252 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 MPIG6BO95866 241 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 CRHBPP24387 322 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 HTD2P86397 168 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 HES1Q14469 280 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 GNMTQ14749 295 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 MED22Q15528 200 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 C9orf152Q5JTZ5 239 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 LY6G6FQ5SQ64 297 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 LIPKQ5VXJ0 399 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 GLT8D1Q68CQ7 371 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 ZNF880Q6PDB4 577 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 TRAT1Q6PIZ9 186 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 ETV3LQ6ZN32 361 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 MOB3BQ86TA1 216 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 ZNF329Q86UD4 541 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 TGIF2LXQ8IUE1 241 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 NICN1Q9BSH3 213 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 CST11Q9H112 138 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 ABCG5Q9H222 651 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 KCNK15Q9H427 330 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 SCN3BQ9NY72 215 aa11.73□□□□□ -0.53
CLN3-213ENST00000565047 PSMB11A5LHX3 300 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 FOXI3A8MTJ6 420 aaPredicted RBP11.72□□□□□ -0.53
CLN3-213ENST00000565047 NAPSAO96009 420 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 HMGN3Q15651 99 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 HSD17B12Q53GQ0 312 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 RBM48Q5RL73 367 aaKnown RBP11.72□□□□□ -0.53
CLN3-213ENST00000565047 C6orf201Q7Z4U5 140 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 PRR18Q8N4B5 295 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 FAM89BQ8N5H3 189 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 FAM71E2Q8N5Q1 922 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 OR4X2Q8NGF9 303 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 OR52L2PQ8NGH6 319 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 OR10V1Q8NGI7 309 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 OR2T10Q8NGZ9 312 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 CHPT1Q8WUD6 406 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 PHF21AQ96BD5 680 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 FAAP24Q9BTP7 215 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 LPAR5Q9H1C0 372 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 TPRKBQ9Y3C4 175 aa11.72□□□□□ -0.53
CLN3-213ENST00000565047 LANCL1O43813 399 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 YPEL1O60688 119 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 MOSP00540 346 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 IGLL1P15814 213 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 CPEP16870 476 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 IL3RAP26951 378 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 GPR12P47775 334 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 F2RL1P55085 397 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 RPS25P62851 125 aaKnown RBP11.71□□□□□ -0.53
CLN3-213ENST00000565047 MLLT11Q13015 90 aaPredicted RBP11.71□□□□□ -0.53
CLN3-213ENST00000565047 C18orf65Q6ZTR6 163 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 PRSS48Q7RTY5 328 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 KCNG3Q8TAE7 436 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 UFD1Q92890 307 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 TMEM203Q969S6 136 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 YPEL2Q96QA6 119 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 S1PR3Q99500 378 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 RAB9BQ9NP90 201 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 OR2S2Q9NQN1 319 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 LIN7CQ9NUP9 197 aaKnown RBP11.71□□□□□ -0.53
CLN3-213ENST00000565047 GNG12Q9UBI6 72 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 LINC00527Q9UJ94 153 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 JPT1Q9UK76 154 aa11.71□□□□□ -0.53
CLN3-213ENST00000565047 TXNL1O43396 289 aa11.7□□□□□ -0.54
CLN3-213ENST00000565047 RGS10O43665 173 aa11.7□□□□□ -0.54
CLN3-213ENST00000565047 BPNT1O95861 308 aa11.7□□□□□ -0.54
CLN3-213ENST00000565047 PPP1CCP36873 323 aaKnown RBP11.7□□□□□ -0.54
CLN3-213ENST00000565047 CFHR3Q02985 330 aa11.7□□□□□ -0.54
CLN3-213ENST00000565047 FOXB2Q5VYV0 432 aa11.7□□□□□ -0.54
CLN3-213ENST00000565047 SLC35E3Q7Z769 313 aa11.7□□□□□ -0.54
CLN3-213ENST00000565047 STPG2Q8N412 459 aa11.7□□□□□ -0.54
CLN3-213ENST00000565047 LINC00482Q8N8I6 264 aa11.7□□□□□ -0.54
CLN3-213ENST00000565047 OR8H1Q8NGG4 311 aa11.7□□□□□ -0.54
CLN3-213ENST00000565047 OR6M1Q8NGM8 313 aa11.7□□□□□ -0.54
CLN3-213ENST00000565047 TMEM59Q9BXS4 323 aa11.7□□□□□ -0.54
CLN3-213ENST00000565047 AURKAIP1Q9NWT8 199 aaPredicted RBP11.7□□□□□ -0.54
CLN3-213ENST00000565047 TRBV6-6A0A0A6YYG2 114 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 SERPINE3A8MV23 424 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 SLC17A2O00624 439 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 SOCS1O15524 211 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 PF4V1P10720 104 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 MAP2K4P45985 399 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 TMEM50BP56557 158 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 RPL23AP62750 156 aaKnown RBP11.69□□□□□ -0.54
CLN3-213ENST00000565047 FABP5Q01469 135 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 LSAMPQ13449 338 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 NKAPLQ5M9Q1 402 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 ZNF833PQ6ZTB9 187 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 OR2W3Q7Z3T1 314 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 REC114Q7Z4M0 266 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 SVOPQ8N4V2 548 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms