RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 OR3A1P47881 315 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 CEBPDP49716 269 aaPredicted RBP7.46□□□□□ -1.22
VPS39-207ENST00000563692 LUMP51884 338 aaPredicted RBP7.46□□□□□ -1.22
VPS39-207ENST00000563692 SNRPD2P62316 118 aaKnown RBP7.46□□□□□ -1.22
VPS39-207ENST00000563692 SRPXP78539 464 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 CCL8P80075 99 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 SRSF4Q08170 494 aaKnown RBP7.46□□□□□ -1.22
VPS39-207ENST00000563692 HMGN3Q15651 99 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 CLEC12BQ2HXU8 276 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 Q6ZPA2 131 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 Q71RC1 249 aaPredicted RBP7.46□□□□□ -1.22
VPS39-207ENST00000563692 PRR18Q8N4B5 295 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 IGFBPL1Q8WX77 278 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 NEUROG1Q92886 237 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 AKR1E2Q96JD6 320 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 SMR3AQ99954 134 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 SUCNR1Q9BXA5 334 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 SHARPINQ9H0F6 387 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 FXYD6Q9H0Q3 95 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 FAM234AQ9H0X4 552 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 DNTTIP1Q9H147 329 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 ZNF665Q9H7R5 613 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 NAA60Q9H7X0 242 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 SAP30LQ9HAJ7 183 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 PIPOXQ9P0Z9 390 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 KIF25Q9UIL4 384 aa7.46□□□□□ -1.22
VPS39-207ENST00000563692 RBM7Q9Y580 266 aaKnown RBP7.46□□□□□ -1.22
VPS39-207ENST00000563692 HRNRQ86YZ3 2850 aaPredicted RBP7.46□□□□□ -1.22
VPS39-207ENST00000563692 HEATR1Q9H583 2144 aaKnown RBP7.45□□□□□ -1.22
VPS39-207ENST00000563692 IGKV1D-17A0A075B6S4 117 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 PPIAL4EA0A075B759 164 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 IGHV3OR15-7A0A075B7D8 119 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 IGKV1-6A0A0C4DH72 117 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 NKX6-3A6NJ46 265 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 DBX1A6NMT0 343 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 PPIAL4DF5H284 164 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 K7N7A8 449 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 OVOL3O00110 214 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 MPPED1O15442 326 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 SPINT2O43291 252 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 ZNF737O75373 536 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 B3GALNT1O75752 331 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 CYB5R3P00387 301 aaPredicted RBP7.45□□□□□ -1.22
VPS39-207ENST00000563692 DANCRP0C864 163 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 PPIAL4FP0DN26 164 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 GNRHRP30968 328 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 CDKN1AP38936 164 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 H2BFSP57053 126 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 RND3P61587 244 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 SUPT4H1P63272 117 aaKnown RBP7.45□□□□□ -1.22
VPS39-207ENST00000563692 C2orf68Q2NKX9 166 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 KRTAP21-3Q3LHN1 58 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 PHLDA2Q53GA4 152 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 SPRNQ5BIV9 151 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 TEX36Q5VZQ5 186 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 DTX2Q86UW9 622 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 H1FOOQ8IZA3 346 aaPredicted RBP7.45□□□□□ -1.22
VPS39-207ENST00000563692 LGI3Q8N145 548 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 MUC15Q8N387 334 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 ANGPTL6Q8NI99 470 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 SECTM1Q8WVN6 248 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 GALNT14Q96FL9 552 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 SDSLQ96GA7 329 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 GON7Q9BXV9 100 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 SLA2Q9H6Q3 261 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 SLC2A9Q9NRM0 540 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 CBLN4Q9NTU7 201 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 OR6C3Q9NZP0 311 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 PAIP2BQ9ULR5 123 aaKnown RBP7.45□□□□□ -1.22
VPS39-207ENST00000563692 PPIAL4AQ9Y536 164 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 HSPB11Q9Y547 144 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 CADP27708 2225 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 ZFHX3Q15911 3703 aa7.45□□□□□ -1.22
VPS39-207ENST00000563692 MAP1AP78559 2803 aaPredicted RBP7.44□□□□□ -1.22
VPS39-207ENST00000563692 NAV3Q8IVL0 2385 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 C3orf85A0A1B0GTC6 90 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 HMSDA8MTL9 139 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.44□□□□□ -1.22
VPS39-207ENST00000563692 LGALS8O00214 317 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 NDUFA2O43678 99 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 ZNF205O95201 554 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 LY6G6DO95868 133 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 CD8AP01732 235 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 RPS2P15880 293 aaKnown RBP7.44□□□□□ -1.22
VPS39-207ENST00000563692 CD80P33681 288 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 GLIPR1P48060 266 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 HTD2P86397 168 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 HERPUD1Q15011 391 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 SWI5Q1ZZU3 235 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 MST1LQ2TV78 715 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 HFEQ30201 348 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 STUMQ69YW2 141 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 LIAT1Q6ZQX7 453 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 CIARTQ8N365 385 aaPredicted RBP7.44□□□□□ -1.22
VPS39-207ENST00000563692 LRTM2Q8N967 370 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 ZBTB34Q8NCN2 500 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 DEFB108BQ8NET1 73 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 OR10V1Q8NGI7 309 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 THAP6Q8TBB0 222 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 MRGPRDQ8TDS7 321 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms