RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CCDC90BQ9GZT6 254 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 OR2S2Q9NQN1 319 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 LRRC42Q9Y546 428 aa13.37□□□□□ -0.27
CLK3-210ENST00000563112 PF4P02776 101 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 UCHL1P09936 223 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 VSIG8P0DPA2 414 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 CD33P20138 364 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 HSPA13P48723 471 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 RPS27AP62979 156 aaKnown RBP13.36□□□□□ -0.27
CLK3-210ENST00000563112 TPBGQ13641 420 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 TCTEX1D4Q5JR98 221 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 KPRPQ5T749 579 aaPredicted RBP13.36□□□□□ -0.27
CLK3-210ENST00000563112 FAM53AQ6NSI3 398 aaPredicted RBP13.36□□□□□ -0.27
CLK3-210ENST00000563112 SLC35E3Q7Z769 313 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 FOXRED2Q8IWF2 684 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 ZNF439Q8NDP4 499 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 TMEM203Q969S6 136 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 ST6GALNAC6Q969X2 333 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 ANKRD60Q9BZ19 345 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 ISYNA1Q9NPH2 558 aa13.36□□□□□ -0.27
CLK3-210ENST00000563112 MBNL3Q9NUK0 354 aaKnown RBP13.36□□□□□ -0.27
CLK3-210ENST00000563112 SLC31A2O15432 143 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 ARL6IP5O75915 188 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 RGS11O94810 467 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 MOSP00540 346 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 PSMA1P25786 263 aaKnown RBP13.35□□□□□ -0.27
CLK3-210ENST00000563112 SLC35B1P78383 322 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 CT45A1Q5HYN5 189 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 OR10K2Q6IF99 312 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 C10orf99Q6UWK7 81 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 OR6M1Q8NGM8 313 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 CT45A3Q8NHU0 189 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 MRPL30Q8TCC3 161 aaKnown RBP13.35□□□□□ -0.27
CLK3-210ENST00000563112 PLGRKTQ9HBL7 147 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 JPT1Q9UK76 154 aa13.35□□□□□ -0.27
CLK3-210ENST00000563112 SLC22A1O15245 554 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 BPNT1O95861 308 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 IGHG2P01859 326 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 CHATP28329 748 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 RANBP1P43487 201 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 ZNF134P52741 427 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 ZNF137PP52743 207 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 MLLT11Q13015 90 aaPredicted RBP13.34□□□□□ -0.27
CLK3-210ENST00000563112 MORN2Q502X0 79 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 OXLD1Q5BKU9 147 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 PRSS48Q7RTY5 328 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 REC114Q7Z4M0 266 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 ZNF329Q86UD4 541 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 WFDC9Q8NEX5 89 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 OR8H1Q8NGG4 311 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 OR52L2PQ8NGH6 319 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 GALMQ96C23 342 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 SULT4A1Q9BR01 284 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 URM1Q9BTM9 101 aaKnown RBP13.34□□□□□ -0.27
CLK3-210ENST00000563112 FAAP24Q9BTP7 215 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 LIN7CQ9NUP9 197 aaKnown RBP13.34□□□□□ -0.27
CLK3-210ENST00000563112 ABRACLQ9P1F3 81 aa13.34□□□□□ -0.27
CLK3-210ENST00000563112 LANCL1O43813 399 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 CD37P11049 281 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 CRHBPP24387 322 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 BLVRBP30043 206 aaPredicted RBP13.33□□□□□ -0.28
CLK3-210ENST00000563112 HTD2P86397 168 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 IZUMO2Q6UXV1 221 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 C6orf201Q7Z4U5 140 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 COMMD1Q8N668 190 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 Q8N6K4 173 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 NOL4LQ96MY1 436 aaPredicted RBP13.33□□□□□ -0.28
CLK3-210ENST00000563112 RASL11BQ9BPW5 248 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 ABHD14AQ9BUJ0 271 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 TM2D1Q9BX74 207 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 CHMP1AQ9HD42 196 aaPredicted RBP13.33□□□□□ -0.28
CLK3-210ENST00000563112 PLEKHJ1Q9NW61 149 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 BLOC1S6Q9UL45 172 aa13.33□□□□□ -0.28
CLK3-210ENST00000563112 PRKDCP78527 4128 aaKnown RBP13.32□□□□□ -0.28
CLK3-210ENST00000563112 TMEM14DPA8MWL7 114 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 AP4M1O00189 453 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 YPEL1O60688 119 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 ARSBP15848 533 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 CPEP16870 476 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 PPP1CCP36873 323 aaKnown RBP13.32□□□□□ -0.28
CLK3-210ENST00000563112 RPS25P62851 125 aaKnown RBP13.32□□□□□ -0.28
CLK3-210ENST00000563112 UNC119Q13432 240 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 OR2W3Q7Z3T1 314 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 OR51D1Q8NGF3 324 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 YPEL2Q96QA6 119 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 S1PR3Q99500 378 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 MGLLQ99685 303 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 GON7Q9BXV9 100 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 ABCG5Q9H222 651 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 RIMS4Q9H426 269 aaPredicted RBP13.32□□□□□ -0.28
CLK3-210ENST00000563112 ZFP57Q9NU63 452 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 STEAP1Q9UHE8 339 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 LINC00527Q9UJ94 153 aa13.32□□□□□ -0.28
CLK3-210ENST00000563112 AK6Q9Y3D8 172 aaKnown RBP13.32□□□□□ -0.28
CLK3-210ENST00000563112 ZNF736B4DX44 427 aaPredicted RBP13.31□□□□□ -0.28
CLK3-210ENST00000563112 SLC17A2O00624 439 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 GPR12P47775 334 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 GNMTQ14749 295 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 P2RY14Q15391 338 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 RAB11BQ15907 218 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms