RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 SAXO1Q8IYX7 474 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 ZNF525Q8N782 197 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 AGBL5Q8NDL9 886 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 MRPL30Q8TCC3 161 aaKnown RBP11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 P2RX4Q99571 388 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 SMIM7Q9BQ49 75 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 MAP1LC3BQ9GZQ8 125 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 CTDSP1Q9GZU7 261 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 TLE1Q04724 770 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 DNLZQ5SXM8 178 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 ABLIM2Q6H8Q1 611 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 TCEAL6Q6IPX3 200 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 BEND4Q6ZU67 534 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 PRR18Q8N4B5 295 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 REPIN1Q9BWE0 567 aaKnown RBP11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 RBKSQ9H477 322 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 PPP1R3CQ9UQK1 317 aa11.91□□□□□ -0.5
VPS9D1-202ENST00000561976 PIGBOS1A0A0B4J2F0 54 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 KIAA1324LA8MWY0 1029 aaPredicted RBP11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 PHOX2AO14813 284 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 ZNF737O75373 536 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 KLF7O75840 302 aaPredicted RBP11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 FGF5P12034 268 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 SPANXN5Q5MJ07 72 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 WDR25Q64LD2 544 aaPredicted RBP11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 NCR3LG1Q68D85 454 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 ZNF324BQ6AW86 544 aaPredicted RBP11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 OR4X1Q8NH49 305 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 PSMG3Q9BT73 122 aaPredicted RBP11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 PHF7Q9BWX1 381 aaPredicted RBP11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 GPR87Q9BY21 358 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 RIMS4Q9H426 269 aaPredicted RBP11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 ZNF407Q9C0G0 2248 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 C3orf80F5H4A9 247 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 MRPL33O75394 65 aaKnown RBP11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 SLC25A6P12236 298 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 ARF1P84077 181 aaKnown RBP11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 RNPS1Q15287 305 aaKnown RBP11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 TMEM41BQ5BJD5 291 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 OR1K1Q8NGR3 316 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 GTF3AQ92664 365 aaKnown RBP11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 LHX4Q969G2 390 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 SGCZQ96LD1 299 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 SLC39A9Q9NUM3 307 aa11.9□□□□□ -0.5
VPS9D1-202ENST00000561976 IFNA10P01566 189 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 CD55P08174 381 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 SERF2P84101 59 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 IL11RAQ14626 422 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 LRRC75BQ2VPJ9 315 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 COLCA1Q6ZS62 124 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 C16orf82Q7Z2V1 217 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 TMEM183AQ8IXX5 376 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 OR10V1Q8NGI7 309 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 SMOC1Q9H4F8 434 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 ZNF576Q9H609 170 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 OR1A1Q9P1Q5 309 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 KCNS2Q9ULS6 477 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 LAMP3Q9UQV4 416 aa11.9□□□□□ -0.51
VPS9D1-202ENST00000561976 CACNA1EQ15878 2313 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 RPUSD4Q96CM3 377 aaKnown RBP11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 ZNF552Q9H707 407 aaPredicted RBP11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 CDH20Q9HBT6 801 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 NAT8Q9UHE5 227 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 TRAV39A0A0B4J263 110 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 UBE2L5PA0A1B0GUS4 154 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 HMGB3O15347 200 aaKnown RBP11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 IGKV1-39P01597 117 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 IGKV1D-39P04432 117 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 CCL4P13236 92 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 GDF1P27539 372 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 TMEM241Q24JQ0 296 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 CLEC12BQ2HXU8 276 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 HAPLN4Q86UW8 402 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 SPEM1Q8N4L4 309 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 OR5R1Q8NH85 324 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 OR4C12Q96R67 309 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 SRD5A3Q9H8P0 318 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 PRSS50Q9UI38 385 aa11.89□□□□□ -0.51
VPS9D1-202ENST00000561976 ERVS71-1P61550 626 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 COL10A1Q03692 680 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 SRYQ05066 204 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 TESK1Q15569 626 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 OR8G2PQ6IF36 304 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 OR2Y1Q8NGV0 311 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 UBALD1Q8TB05 177 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 PINX1Q96BK5 328 aaKnown RBP11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 ADGRG7Q96K78 797 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 OR5B12Q96R08 314 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 WDR61Q9GZS3 305 aaKnown RBP11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 CYTIPO60759 359 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 FOLR3P41439 243 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 IFI44Q8TCB0 444 aa11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 LSM10Q969L4 123 aaKnown RBP11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 CHD3Q12873 2000 aaKnown RBP11.88□□□□□ -0.51
VPS9D1-202ENST00000561976 TRAV24A0A0B4J272 114 aa11.87□□□□□ -0.51
VPS9D1-202ENST00000561976 PPP5D1E7EU14 171 aa11.87□□□□□ -0.51
VPS9D1-202ENST00000561976 NGFP01138 241 aa11.87□□□□□ -0.51
VPS9D1-202ENST00000561976 IGKV1-5P01602 117 aa11.87□□□□□ -0.51
VPS9D1-202ENST00000561976 FGF7P21781 194 aa11.87□□□□□ -0.51
VPS9D1-202ENST00000561976 BSXQ3C1V8 233 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms