RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 DGCR2P98153 550 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 GPR176Q14439 515 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 C6orf183Q5T699 404 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 UNQ9370/PRO34162Q6UXP9 181 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 LYPD6Q86Y78 171 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 C8orf59Q8N0T1 100 aaPredicted RBP14.9□□□□□ -0.02
VPS35-202ENST00000561713 C8orf31Q8N9H6 132 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 BPIFB6Q8NFQ5 453 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 RAX2Q96IS3 184 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 S1PR3Q99500 378 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 P2RX4Q99571 388 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 ABCG5Q9H222 651 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 PLSCR3Q9NRY6 295 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 PSORS1C1Q9UIG5 152 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 STAB2Q8WWQ8 2551 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 HUWE1Q7Z6Z7 4374 aaKnown RBP14.9□□□□□ -0.02
VPS35-202ENST00000561713 H0YHG0 523 aa14.89□□□□□ -0.03
VPS35-202ENST00000561713 AP4M1O00189 453 aa14.89□□□□□ -0.03
VPS35-202ENST00000561713 MOSP00540 346 aa14.89□□□□□ -0.03
VPS35-202ENST00000561713 PPP1CCP36873 323 aaKnown RBP14.89□□□□□ -0.03
VPS35-202ENST00000561713 F2RL1P55085 397 aa14.89□□□□□ -0.03
VPS35-202ENST00000561713 OR10K2Q6IF99 312 aa14.89□□□□□ -0.03
VPS35-202ENST00000561713 ZNF695Q8IW36 515 aa14.89□□□□□ -0.03
VPS35-202ENST00000561713 OR52L2PQ8NGH6 319 aa14.89□□□□□ -0.03
VPS35-202ENST00000561713 MRPL30Q8TCC3 161 aaKnown RBP14.89□□□□□ -0.03
VPS35-202ENST00000561713 TAF9BQ9HBM6 251 aa14.89□□□□□ -0.03
VPS35-202ENST00000561713 CNOT2Q9NZN8 540 aaKnown RBP14.89□□□□□ -0.03
VPS35-202ENST00000561713 SACSQ9NZJ4 4579 aa14.89□□□□□ -0.03
VPS35-202ENST00000561713 EPPK1P58107 5090 aaKnown RBP14.89□□□□□ -0.03
VPS35-202ENST00000561713 CD1BP29016 333 aa14.88□□□□□ -0.03
VPS35-202ENST00000561713 MYCNOSP40205 109 aa14.88□□□□□ -0.03
VPS35-202ENST00000561713 LUMP51884 338 aaPredicted RBP14.88□□□□□ -0.03
VPS35-202ENST00000561713 ZNF137PP52743 207 aa14.88□□□□□ -0.03
VPS35-202ENST00000561713 LSAMPQ13449 338 aa14.88□□□□□ -0.03
VPS35-202ENST00000561713 GAPTQ8N292 157 aa14.88□□□□□ -0.03
VPS35-202ENST00000561713 MRPL20Q9BYC9 149 aaKnown RBP14.88□□□□□ -0.03
VPS35-202ENST00000561713 PDCD6O75340 191 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 SC5DO75845 299 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 GPR50Q13585 617 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 TEX38Q6PEX7 206 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 FAM71E2Q8N5Q1 922 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 COMMD1Q8N668 190 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 NKAIN3Q8N8D7 197 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 FBLIM1Q8WUP2 373 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 MRPS24Q96EL2 167 aaKnown RBP14.87□□□□□ -0.03
VPS35-202ENST00000561713 RASL11BQ9BPW5 248 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 ABHD14AQ9BUJ0 271 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 TMED9Q9BVK6 235 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 OR2S2Q9NQN1 319 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 ZFP57Q9NU63 452 aa14.87□□□□□ -0.03
VPS35-202ENST00000561713 LSM4Q9Y4Z0 139 aaKnown RBP14.87□□□□□ -0.03
VPS35-202ENST00000561713 ANKRD65E5RJM6 399 aa14.86□□□□□ -0.03
VPS35-202ENST00000561713 TXNL1O43396 289 aa14.86□□□□□ -0.03
VPS35-202ENST00000561713 FUT3P21217 361 aa14.86□□□□□ -0.03
VPS35-202ENST00000561713 CNTFRP26992 372 aa14.86□□□□□ -0.03
VPS35-202ENST00000561713 GP2P55259 537 aaKnown RBP14.86□□□□□ -0.03
VPS35-202ENST00000561713 GABPB1Q06547 395 aaPredicted RBP14.86□□□□□ -0.03
VPS35-202ENST00000561713 MMDQ15546 238 aa14.86□□□□□ -0.03
VPS35-202ENST00000561713 Q3ZCU0 254 aa14.86□□□□□ -0.03
VPS35-202ENST00000561713 CXorf66Q5JRM2 361 aaPredicted RBP14.86□□□□□ -0.03
VPS35-202ENST00000561713 RBM48Q5RL73 367 aaKnown RBP14.86□□□□□ -0.03
VPS35-202ENST00000561713 OGFRL1Q5TC84 451 aaPredicted RBP14.86□□□□□ -0.03
VPS35-202ENST00000561713 NANOGP1Q8N7R0 232 aa14.86□□□□□ -0.03
VPS35-202ENST00000561713 SULT4A1Q9BR01 284 aa14.86□□□□□ -0.03
VPS35-202ENST00000561713 C8orf4Q9NR00 106 aa14.86□□□□□ -0.03
VPS35-202ENST00000561713 ZMAT5Q9UDW3 170 aaKnown RBP14.86□□□□□ -0.03
VPS35-202ENST00000561713 FAM90A10PA6NDY2 464 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 FAM90A7PA6NKC0 464 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 FAM90A23PA8MXZ1 464 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 CCL24O00175 119 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 OR3A3P47888 321 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 CFHR3Q02985 330 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 PNLIPRP3Q17RR3 467 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 C6orf141Q5SZD1 244 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 TRAT1Q6PIZ9 186 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 ODF3L1Q8IXM7 274 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 RITA1Q96K30 269 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 PRR25Q96S07 402 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 NICN1Q9BSH3 213 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 DCLRE1BQ9H816 532 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 MBNL3Q9NUK0 354 aaKnown RBP14.85□□□□□ -0.03
VPS35-202ENST00000561713 FKBP14Q9NWM8 211 aa14.85□□□□□ -0.03
VPS35-202ENST00000561713 TENM2Q9NT68 2774 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 C3orf84H3BNL1 204 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 LANCL1O43813 399 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 RRP9O43818 475 aaKnown RBP14.84□□□□□ -0.03
VPS35-202ENST00000561713 RAMP3O60896 148 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 VDAC1P21796 283 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 MAPK3P27361 379 aaPredicted RBP14.84□□□□□ -0.03
VPS35-202ENST00000561713 CHATP28329 748 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 SLC6A1P30531 599 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 SOX6P35712 828 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 FOXE3Q13461 319 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 TMEM30BQ3MIR4 351 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 MORN2Q502X0 79 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 C6orf201Q7Z4U5 140 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 LRRTM1Q86UE6 522 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 ASCL2Q99929 193 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 UQCC2Q9BRT2 126 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 RAB9BQ9NP90 201 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms