RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 C7orf33Q8WU49 177 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 YIPF5Q969M3 257 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 APOBEC3DQ96AK3 386 aaPredicted RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 FXYD5Q96DB9 178 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 MS4A6EQ96DS6 147 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 MALSU1Q96EH3 234 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 SLC25A44Q96H78 314 aaPredicted RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 VSIG2Q96IQ7 327 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ABHD14BQ96IU4 210 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 PPP1R2P1Q96PQ5 205 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 RNF157Q96PX1 679 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 OR52B2Q96RD2 323 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 SOSTQ9BQB4 213 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 PRSS27Q9BQR3 290 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 RTBDNQ9BSG5 229 aaPredicted RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 PAXXQ9BUH6 204 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 CCDC32Q9BV29 185 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ZNF717Q9BY31 904 aaPredicted RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 MAP1LC3BQ9GZQ8 125 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 MIXL1Q9H2W2 232 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 IFI27L2Q9H2X8 130 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 CDC42EP4Q9H3Q1 356 aaKnown RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 TMPRSS5Q9H3S3 457 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 NANOGQ9H9S0 305 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ZNF556Q9HAH1 456 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 HMG20AQ9NP66 347 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 KCNIP2Q9NS61 270 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 LYRM2Q9NU23 88 aaPredicted RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 C14orf105Q9NVL8 296 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ZNF581Q9P0T4 197 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 SMPXQ9UHP9 88 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 RWDD2AQ9UIY3 292 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 ZNF223Q9UK11 482 aaPredicted RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 PSG8Q9UQ74 426 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 SLC35A3Q9Y2D2 325 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 CARHSP1Q9Y2V2 147 aaKnown RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 NEUROG3Q9Y4Z2 214 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 PCYT1BQ9Y5K3 369 aaPredicted RBP1.53□□□□□ -2.16
RTF1-207ENST00000561076 SLC22A7Q9Y694 548 aa1.53□□□□□ -2.16
RTF1-207ENST00000561076 KIAA1210Q9ULL0 1709 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 EPRSP07814 1512 aaKnown RBP1.52□□□□□ -2.17
RTF1-207ENST00000561076 TOP2AP11388 1531 aaKnown RBP1.52□□□□□ -2.17
RTF1-207ENST00000561076 ABCC2Q92887 1545 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 KIAA0586Q9BVV6 1533 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 WRNQ14191 1432 aaPredicted RBP eCLIP1.52□□□□□ -2.17
RTF1-207ENST00000561076 UHRF1BP1Q6BDS2 1440 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 UACAQ9BZF9 1416 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 YTHDC2Q9H6S0 1430 aaKnown RBP1.52□□□□□ -2.17
RTF1-207ENST00000561076 ASTN1O14525 1302 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 hCG_1818297A0A087WSY0 165 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 LOC102724200A0A096LPH7 203 aaPredicted RBP1.52□□□□□ -2.17
RTF1-207ENST00000561076 IGHV3-66A0A0C4DH42 116 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 IGKV1-8A0A0C4DH67 115 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 IGHV1-69-2A0A0G2JMI3 117 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 EXOC1LA0A1B0GW35 172 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 OR5H1A6NKK0 313 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 A8MT66 165 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 A8MWL6 223 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 C8orf87E5RJ46 101 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 H3BSA7 217 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 K7ERS5 55 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 FAAHO00519 579 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 MRASO14807 208 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 TCF21O43680 179 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 GSTZ1O43708 216 aaPredicted RBP1.52□□□□□ -2.17
RTF1-207ENST00000561076 SMIM24O75264 130 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 INSP01308 110 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 IFNA7P01567 189 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 IGHV3-11P01762 117 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 HLA-DRB1P01911 266 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 HLA-DQB2P05538 268 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 C1GALT1C1LP0DN25 315 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 COX4I1P13073 169 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 ZNF708P17019 499 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 IL1RNP18510 177 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 ELK1P19419 428 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 OR10J1P30954 320 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 PPP1CCP36873 323 aaKnown RBP1.52□□□□□ -2.17
RTF1-207ENST00000561076 POLR2IP36954 125 aaKnown RBP1.52□□□□□ -2.17
RTF1-207ENST00000561076 CA7P43166 264 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 PSMB3P49720 205 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 GZMMP51124 257 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 HMGA2P52926 109 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 CTBP2P56545 445 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 C1QTNF8P60827 252 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 HSPE1P61604 102 aaKnown RBP1.52□□□□□ -2.17
RTF1-207ENST00000561076 RPS24P62847 133 aaKnown RBP1.52□□□□□ -2.17
RTF1-207ENST00000561076 HERVK_113P63121 156 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 BTN1A1Q13410 526 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 FCN2Q15485 313 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 KCNJ8Q15842 424 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 Q1RN00 199 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 TMEM241Q24JQ0 296 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 RSPO1Q2MKA7 263 aaPredicted RBP1.52□□□□□ -2.17
RTF1-207ENST00000561076 IAH1Q2TAA2 248 aaPredicted RBP1.52□□□□□ -2.17
RTF1-207ENST00000561076 SCGB2B2Q4G0G5 96 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 KLHL12Q53G59 568 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 TMEM128Q5BJH2 165 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 CLLU1OSQ5K130 101 aa1.52□□□□□ -2.17
RTF1-207ENST00000561076 BRMS1LQ5PSV4 323 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms