RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ERGIC3Q9Y282 383 aa8.05□□□□□ -1.12
LDLR-214ENST00000560628 FAM90A10PA6NDY2 464 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 FAM90A7PA6NKC0 464 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 FAM90A23PA8MXZ1 464 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 H0YHG0 523 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 AP4M1O00189 453 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 PDCD6O75340 191 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 RPLP1P05386 114 aaKnown RBP8.04□□□□□ -1.12
LDLR-214ENST00000560628 PPP1CCP36873 323 aaKnown RBP8.04□□□□□ -1.12
LDLR-214ENST00000560628 GP2P55259 537 aaKnown RBP8.04□□□□□ -1.12
LDLR-214ENST00000560628 GABPB1Q06547 395 aaPredicted RBP8.04□□□□□ -1.12
LDLR-214ENST00000560628 GPR50Q13585 617 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 PNLIPRP3Q17RR3 467 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 MORN2Q502X0 79 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 UNQ9370/PRO34162Q6UXP9 181 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 ZNF695Q8IW36 515 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 GAPTQ8N292 157 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 HSPB9Q9BQS6 159 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 UQCC2Q9BRT2 126 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 FAAP24Q9BTP7 215 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 TMED9Q9BVK6 235 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 RAB9BQ9NP90 201 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 LIN7CQ9NUP9 197 aaKnown RBP8.04□□□□□ -1.12
LDLR-214ENST00000560628 FKBP14Q9NWM8 211 aa8.04□□□□□ -1.12
LDLR-214ENST00000560628 CCL24O00175 119 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 CASQ2O14958 399 aaPredicted RBP8.03□□□□□ -1.12
LDLR-214ENST00000560628 CA11O75493 328 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 SC5DO75845 299 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 DUS4LO95620 317 aaKnown RBP8.03□□□□□ -1.12
LDLR-214ENST00000560628 GLAP06280 429 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 CDK1P06493 297 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 MAPK3P27361 379 aaPredicted RBP8.03□□□□□ -1.12
LDLR-214ENST00000560628 MYCNOSP40205 109 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 RAB25P57735 213 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 Q3ZCU0 254 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 C6orf141Q5SZD1 244 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 TEX38Q6PEX7 206 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 TRAT1Q6PIZ9 186 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 CEACAM19Q7Z692 300 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 LRRTM1Q86UE6 522 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 COMMD1Q8N668 190 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 NKAIN3Q8N8D7 197 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 MRPL30Q8TCC3 161 aaKnown RBP8.03□□□□□ -1.12
LDLR-214ENST00000560628 RAX2Q96IS3 184 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 RITA1Q96K30 269 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 NEDD4LQ96PU5 975 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 P2RX4Q99571 388 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 SULT4A1Q9BR01 284 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 KCNK15Q9H427 330 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 DCLRE1BQ9H816 532 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 MBNL3Q9NUK0 354 aaKnown RBP8.03□□□□□ -1.12
LDLR-214ENST00000560628 GHRLQ9UBU3 117 aa8.03□□□□□ -1.12
LDLR-214ENST00000560628 NKX1-2Q9UD57 310 aaPredicted RBP8.03□□□□□ -1.12
LDLR-214ENST00000560628 TXNL1O43396 289 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 LANCL1O43813 399 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 VSIG8P0DPA2 414 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 SLC2A2P11168 524 aaPredicted RBP8.02□□□□□ -1.13
LDLR-214ENST00000560628 MYF6P23409 242 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 CHATP28329 748 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 HTR2CP28335 458 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 SOX6P35712 828 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 OR3A3P47888 321 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 ZNF137PP52743 207 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 EGFEM1PQ0D2K5 195 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 LSAMPQ13449 338 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 SPHARQ15513 63 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 DEFB136Q30KP8 78 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 TMEM30BQ3MIR4 351 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 CXorf66Q5JRM2 361 aaPredicted RBP8.02□□□□□ -1.13
LDLR-214ENST00000560628 RBM48Q5RL73 367 aaKnown RBP8.02□□□□□ -1.13
LDLR-214ENST00000560628 STEAP3Q658P3 488 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 GLT8D1Q68CQ7 371 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 C6orf201Q7Z4U5 140 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 ODF3L1Q8IXM7 274 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 MS4A15Q8N5U1 240 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 OR8H1Q8NGG4 311 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 THRSPQ92748 146 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 DPF1Q92782 380 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 TMEM203Q969S6 136 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 ABHD14AQ9BUJ0 271 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 MND1Q9BWT6 205 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 GON7Q9BXV9 100 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 MRPL20Q9BYC9 149 aaKnown RBP8.02□□□□□ -1.13
LDLR-214ENST00000560628 CST11Q9H112 138 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 VCXQ9H320 206 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 WSB1Q9Y6I7 421 aa8.02□□□□□ -1.13
LDLR-214ENST00000560628 RRP9O43818 475 aaKnown RBP8.01□□□□□ -1.13
LDLR-214ENST00000560628 UBBP0CG47 229 aa8.01□□□□□ -1.13
LDLR-214ENST00000560628 SRMP19623 302 aa8.01□□□□□ -1.13
LDLR-214ENST00000560628 CNTFRP26992 372 aa8.01□□□□□ -1.13
LDLR-214ENST00000560628 BLVRBP30043 206 aaPredicted RBP8.01□□□□□ -1.13
LDLR-214ENST00000560628 RPS27AP62979 156 aaKnown RBP8.01□□□□□ -1.13
LDLR-214ENST00000560628 FOXE3Q13461 319 aa8.01□□□□□ -1.13
LDLR-214ENST00000560628 MED22Q15528 200 aa8.01□□□□□ -1.13
LDLR-214ENST00000560628 MMDQ15546 238 aa8.01□□□□□ -1.13
LDLR-214ENST00000560628 HSD17B12Q53GQ0 312 aa8.01□□□□□ -1.13
LDLR-214ENST00000560628 C1orf100Q5SVJ3 147 aa8.01□□□□□ -1.13
LDLR-214ENST00000560628 RNLSQ5VYX0 342 aa8.01□□□□□ -1.13
LDLR-214ENST00000560628 FAM71E2Q8N5Q1 922 aa8.01□□□□□ -1.13
LDLR-214ENST00000560628 SETD6Q8TBK2 473 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms