RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	PRR18	Q8N4B5	295 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	OR4K15	Q8NH41	348 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	UFD1	Q92890	307 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	GALM	Q96C23	342 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	CHCHD6	Q9BRQ6	235 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	ABCG5	Q9H222	651 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	RIMS4	Q9H426	269 aa	Predicted RBP	11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	BANF2	Q9H503	90 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	TAF9B	Q9HBM6	251 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	MBNL3	Q9NUK0	354 aa	Known RBP	11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	NKX1-2	Q9UD57	310 aa	Predicted RBP	11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	STEAP1	Q9UHE8	339 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	MGAT4A	Q9UM21	535 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	CMYA5	Q8N3K9	4069 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445		A0A1W2PPE3	182 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	ARL6IP5	O75915	188 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	MPIG6B	O95866	241 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	GPR12	P47775	334 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	PNLIPRP3	Q17RR3	467 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	CXorf66	Q5JRM2	361 aa	Predicted RBP	11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	LY6G6F	Q5SQ64	297 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	HIST2H2BD	Q6DRA6	164 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	UNQ9370/PRO34162	Q6UXP9	181 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	STPG2	Q8N412	459 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	OR6M1	Q8NGM8	313 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	ST6GALNAC6	Q969X2	333 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	URM1	Q9BTM9	101 aa	Known RBP	11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	ABHD14A	Q9BUJ0	271 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	GHITM	Q9H3K2	345 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	ZNF580	Q9UK33	172 aa		11.15	□□□□□ -0.62
TPM1-223	ENST00000560445	IGHV3-43	A0A0B4J1X8	118 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	SH2D7	A6NKC9	451 aa	Predicted RBP	11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	IGHV3-43D	P0DP04	118 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	IGLL1	P15814	213 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	VDAC1	P21796	283 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	HTR2C	P28335	458 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	SOX6	P35712	828 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	MYCNOS	P40205	109 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	HSPA13	P48723	471 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	AQP4	P55087	323 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	DIAPH2-AS1	Q14236	149 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	NKAPL	Q5M9Q1	402 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	C1orf100	Q5SVJ3	147 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	UTF1	Q5T230	341 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	FOXB2	Q5VYV0	432 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	FAM71F2	Q6NXP2	309 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	OR2W3	Q7Z3T1	314 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	ZNF695	Q8IW36	515 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445		Q8N6K4	173 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	TMEM104	Q8NE00	496 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	KLHL30-AS1	Q8NEE0	82 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	OR2AK2	Q8NG84	335 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	FAM46B	Q96A09	425 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	S1PR3	Q99500	378 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	TMED9	Q9BVK6	235 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	CHMP1A	Q9HD42	196 aa	Predicted RBP	11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	ZNF581	Q9P0T4	197 aa		11.14	□□□□□ -0.63
TPM1-223	ENST00000560445	IGHV3-72	A0A0B4J1Y9	119 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	UBE2QL1	A1L167	161 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	RGS10	O43665	173 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	YPEL1	O60688	119 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	ELANE	P08246	267 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	RCC1	P18754	421 aa	Predicted RBP	11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	SRM	P19623	302 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	PSMD7	P51665	324 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	RPS27A	P62979	156 aa	Known RBP	11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	LSAMP	Q13449	338 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	FOXE3	Q13461	319 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445		Q6ZPA2	131 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	CEACAM19	Q7Z692	300 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	ZNF329	Q86UD4	541 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	LYPD6	Q86Y78	171 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	ZNF439	Q8NDP4	499 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	OR10V1	Q8NGI7	309 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	OR8U1	Q8NH10	309 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	OR1L1	Q8NH94	360 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	YPEL2	Q96QA6	119 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	CCDC90B	Q9GZT6	254 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	ISYNA1	Q9NPH2	558 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	BLOC1S6	Q9UL45	172 aa		11.13	□□□□□ -0.63
TPM1-223	ENST00000560445	UCHL1	P09936	223 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	MYF6	P23409	242 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	CHAT	P28329	748 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	THBS3	P49746	956 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	MMD	Q15546	238 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	MORN2	Q502X0	79 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	CT45A1	Q5HYN5	189 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	LINC00482	Q8N8I6	264 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445		Q8N9W7	124 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	CT45A3	Q8NHU0	189 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	UBALD1	Q8TB05	177 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	MRPL30	Q8TCC3	161 aa	Known RBP	11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	NRG4	Q8WWG1	115 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	NOL4L	Q96MY1	436 aa	Predicted RBP	11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	ZNF251	Q9BRH9	671 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	TM2D1	Q9BX74	207 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	ANKRD60	Q9BZ19	345 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	PLGRKT	Q9HBL7	147 aa		11.12	□□□□□ -0.63
TPM1-223	ENST00000560445	PLEKHJ1	Q9NW61	149 aa		11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms