RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 GAGE1Q13065 139 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 GAGE4Q13068 117 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 ASAH1Q13510 395 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 ARFRP1Q13795 201 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 DAZAP2Q15038 168 aaPredicted RBP4.28□□□□□ -1.72
LDLR-209ENST00000558528 KCNJ8Q15842 424 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 SRSF7Q16629 238 aaKnown RBP eCLIP4.28□□□□□ -1.72
LDLR-209ENST00000558528 TATDN3Q17R31 274 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 ZNF260Q3ZCT1 412 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 CDNFQ49AH0 187 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 SPIN3Q5JUX0 258 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 ADAM5Q6NVV9 412 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 FAM122CQ6P4D5 195 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 HAGHLQ6PII5 290 aaPredicted RBP4.28□□□□□ -1.72
LDLR-209ENST00000558528 SIGLEC15Q6ZMC9 328 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 SLC25A26Q70HW3 274 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 TMEM17Q86X19 198 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 FBXL14Q8N1E6 418 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 OR4M2Q8NGB6 313 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 OR11L1Q8NGX0 322 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 NPRL2Q8WTW4 380 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 GIMAP1Q8WWP7 306 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 GTF3AQ92664 365 aaKnown RBP4.28□□□□□ -1.72
LDLR-209ENST00000558528 SLC25A38Q96DW6 304 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 SCGB3A2Q96PL1 93 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 DHRS9Q9BPW9 319 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 SELENOIQ9C0D9 397 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 CHST6Q9GZX3 395 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 LPAR5Q9H1C0 372 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 VCX2Q9H322 139 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 OR51B6Q9H340 312 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 OR51I2Q9H344 312 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 AUNIPQ9H7T9 357 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 FN3KRPQ9HA64 309 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 RAB9BQ9NP90 201 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 RBFOX1Q9NWB1 397 aaKnown RBP4.28□□□□□ -1.72
LDLR-209ENST00000558528 TAAR3PQ9P1P4 343 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 MTFP1Q9UDX5 166 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 ST3GAL6Q9Y274 331 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 WDR83OSQ9Y284 106 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 RNF115Q9Y4L5 304 aa4.28□□□□□ -1.72
LDLR-209ENST00000558528 KLF2Q9Y5W3 355 aaPredicted RBP4.28□□□□□ -1.72
LDLR-209ENST00000558528 PCNX3Q9H6A9 2034 aa4.28□□□□□ -1.73
LDLR-209ENST00000558528 A0A0U1RRA0 63 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 FAM240BA0A1B0GVZ2 78 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 FUOMA2VDF0 154 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 C5orf63A6NC05 138 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 DISC1C4P0D8 188 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 ATP6V1G2-DDX39BF2Z307 99 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 M0R233 179 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 ARPC1BO15143 372 aaKnown RBP4.27□□□□□ -1.73
LDLR-209ENST00000558528 LYRM1O43325 122 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 ORC5O43913 435 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 NDUFS7O75251 213 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 NXPH2O95156 264 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 IFNA6P05013 189 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 CD55P08174 381 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 CD3GP09693 182 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 CSF3P09919 207 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 CTXN2P0C2S0 81 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 OR4A8P0C604 315 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 AKAIN1P0CW23 69 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 RPA2P15927 270 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 HIST1H1DP16402 221 aaKnown RBP4.27□□□□□ -1.73
LDLR-209ENST00000558528 DTYMKP23919 212 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 MPV17P39210 176 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 MDH2P40926 338 aaKnown RBP4.27□□□□□ -1.73
LDLR-209ENST00000558528 RAG2P55895 527 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 RBM11P57052 281 aaKnown RBP4.27□□□□□ -1.73
LDLR-209ENST00000558528 TAS2R46P59540 309 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 SNRPD2P62316 118 aaKnown RBP4.27□□□□□ -1.73
LDLR-209ENST00000558528 TNFAIP6P98066 277 aaPredicted RBP4.27□□□□□ -1.73
LDLR-209ENST00000558528 BSPH1Q075Z2 132 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 MEF2DQ14814 521 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 ZNF79Q15937 498 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 ASPHD1Q5U4P2 390 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 PLET1Q6UQ28 207 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 DNM1P46Q6ZS02 220 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 MYPOPQ86VE0 399 aaPredicted RBP4.27□□□□□ -1.73
LDLR-209ENST00000558528 SNX29P2Q8IUI4 249 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 FAM58AQ8N1B3 248 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 TMEM229BQ8NBD8 167 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 POC1AQ8NBT0 407 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 BHLHE23Q8NDY6 225 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 OR2AK2Q8NG84 335 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 OR2Z1Q8NG97 314 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 OR5D18Q8NGL1 313 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 OR52I2Q8NH67 350 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 LINC01560Q8TB33 94 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 ENKURQ8TC29 256 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 GPX8Q8TED1 209 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 HPSE2Q8WWQ2 592 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 ITLN2Q8WWU7 325 aaPredicted RBP4.27□□□□□ -1.73
LDLR-209ENST00000558528 AQP3Q92482 292 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 EMG1Q92979 244 aaKnown RBP4.27□□□□□ -1.73
LDLR-209ENST00000558528 SGK494Q96LW2 274 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 SPACA5Q96QH8 159 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 RAB1BQ9H0U4 201 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 TLNRD1Q9H1K6 362 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 BANF2Q9H503 90 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms