RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 GCNT2Q8N0V5 402 aa10.92□□□□□ -0.66
LDLR-207ENST00000558013 GNG13Q9P2W3 67 aa10.92□□□□□ -0.66
LDLR-207ENST00000558013 ATPIF1Q9UII2 106 aa10.92□□□□□ -0.66
LDLR-207ENST00000558013 KCNS2Q9ULS6 477 aa10.92□□□□□ -0.66
LDLR-207ENST00000558013 SCAF4O95104 1147 aaKnown RBP10.91□□□□□ -0.66
LDLR-207ENST00000558013 CXCL1P09341 107 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 ARR3P36575 388 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 TAGLN2P37802 199 aaKnown RBP10.91□□□□□ -0.66
LDLR-207ENST00000558013 RPS10P46783 165 aaKnown RBP10.91□□□□□ -0.66
LDLR-207ENST00000558013 LINC00205P59089 165 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 RPS16P62249 146 aaKnown RBP10.91□□□□□ -0.66
LDLR-207ENST00000558013 HLA-DRB3P79483 266 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 DLK1P80370 383 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 PMP22Q01453 160 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 RHEBQ15382 184 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 SLC25A24Q6NUK1 477 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 HAPLN4Q86UW8 402 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 ZNF573Q86YE8 665 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 ATP5SQ99766 215 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 STRADBQ9C0K7 418 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 TUBA4BQ9H853 241 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 RPRMQ9NS64 109 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 ZFP92A6NM28 416 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 LINC00587B1AMM8 73 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 YIF1AO95070 293 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 OR2H2O95918 312 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 ERVFRD-1P60508 538 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 ZNF585BQ52M93 769 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 ZNF429Q86V71 674 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 LFNGQ8NES3 379 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 OR10V1Q8NGI7 309 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 CLDND2Q8NHS1 167 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 YPEL4Q96NS1 127 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 ZNF665Q9H7R5 613 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 IFT22Q9H7X7 185 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 NIT2Q9NQR4 276 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 WSB1Q9Y6I7 421 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 IGHV2-5P01817 119 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 GRPP07492 148 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 UBE2KP61086 200 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 RPL23AP62750 156 aaKnown RBP10.91□□□□□ -0.66
LDLR-207ENST00000558013 CTAG1AP78358 180 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 ZNF726P1Q15940 193 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 DHRS13Q6UX07 377 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 SCCPDHQ8NBX0 429 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 MUCL1Q96DR8 90 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 WDYHV1Q96HA8 205 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 KIAA1456Q9P272 454 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 OR14J1Q9UGF5 321 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 TRAPPC2LQ9UL33 140 aa10.91□□□□□ -0.66
LDLR-207ENST00000558013 ICE1Q9Y2F5 2266 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 CACNA1GO43497 2377 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 TGIF2-C20orf24A0A0A6YYL0 155 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 CLN5O75503 358 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 SP1P08047 785 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 COX5BP10606 129 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 IDH3GP51553 393 aaPredicted RBP10.9□□□□□ -0.66
LDLR-207ENST00000558013 SRSF7Q16629 238 aaKnown RBP eCLIP10.9□□□□□ -0.66
LDLR-207ENST00000558013 HEPN1Q6WQI6 88 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 Q8WTZ3 238 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 SPRR3Q9UBC9 169 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 PCNX2A6NKB5 2137 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 PRSS44E7EML9 344 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 HMGB3O15347 200 aaKnown RBP10.9□□□□□ -0.66
LDLR-207ENST00000558013 CTXN2P0C2S0 81 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 TAS2R30P59541 319 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 ZNF826PQ6ZT77 177 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 CEP250Q9BV73 2442 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 CADP27708 2225 aa10.9□□□□□ -0.66
LDLR-207ENST00000558013 WNT9BO14905 357 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 RAMP3O60896 148 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 LYZL6O75951 148 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 CEACAM6P40199 344 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 IL24Q13007 206 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 STX12Q86Y82 276 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 BCL2L2Q92843 193 aaPredicted RBP10.89□□□□□ -0.67
LDLR-207ENST00000558013 RD3LP0DJH9 198 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 B2MP61769 119 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 SPANXN5Q5MJ07 72 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 ZNF880Q6PDB4 577 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 BEND4Q6ZU67 534 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 GNPNAT1Q96EK6 184 aaPredicted RBP10.89□□□□□ -0.67
LDLR-207ENST00000558013 IER2Q9BTL4 223 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 GP6Q9HCN6 339 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 MPC1Q9Y5U8 109 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 A0A1B0GW64 132 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 PSPNO60542 156 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 CD55P08174 381 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 ELLP55199 621 aaPredicted RBP10.89□□□□□ -0.67
LDLR-207ENST00000558013 RAB11AP62491 216 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 BAXQ07812 192 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 SLC10A1Q14973 349 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 DBX2Q6ZNG2 339 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 FZR1Q9UM11 496 aa10.89□□□□□ -0.67
LDLR-207ENST00000558013 KMT2EQ8IZD2 1858 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 SYNGR2O43760 224 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 ELOBQ15370 118 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 FBXW9Q5XUX1 488 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 TPRX1Q8N7U7 411 aa10.88□□□□□ -0.67
LDLR-207ENST00000558013 DDA1Q9BW61 102 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms